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AT3G04790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25740923 (2015): plastid
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:21539947 (2011): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:19334764 (2009): plasma membrane
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16648217 (2006): plastid
  • PMID:16207701 (2006): plastid
  • PMID:15322131 (2004): plastid
  • PMID:15028209 (2004): plastid
  • PMID:12938931 (2003): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribose 5-phosphate isomerase, type A protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribose 5-phosphate isomerase, type A protein; FUNCTIONS IN: ribose-5-phosphate isomerase activity; INVOLVED IN: defense response to bacterium, reductive pentose-phosphate cycle; LOCATED IN: thylakoid, chloroplast thylakoid membrane, chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Ribose 5-phosphate isomerase, type A (InterPro:IPR004788); BEST Arabidopsis thaliana protein match is: ribose-5-phosphate isomerase 2 (TAIR:AT2G01290.1); Has 5044 Blast hits to 5043 proteins in 1956 species: Archae - 235; Bacteria - 3572; Metazoa - 110; Fungi - 145; Plants - 141; Viruses - 0; Other Eukaryotes - 841 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G04790-MONOMERBioGrid:4974EC:5.3.1.6eggNOG:COG0120eggNOG:KOG3075EMBL:AC009465EMBL:AC011437
EMBL:AY045785EMBL:AY088382EMBL:AY142600EMBL:CP002686EnsemblPlants:AT3G04790EnsemblPlants:AT3G04790.1entrez:819639
GeneID:819639Genevisible:Q9S726GO:GO:0004751GO:GO:0009052GO:GO:0009507GO:GO:0009535GO:GO:0009570
GO:GO:0009579GO:GO:0009735GO:GO:0009941GO:GO:0019253GO:GO:0042742Gramene:AT3G04790.1gramene_pathway:5.3.1.6
gramene_pathway:CALVIN-PWYgramene_pathway:NONOXIPENT-PWYgramene_pathway:PWY-5723gramene_pathway:RIBOKIN2-PWYgramene_plant_reactome:1119519gramene_plant_reactome:6877180HAMAP:MF_00170
hmmpanther:PTHR11934hmmpanther:PTHR11934:SF0HOGENOM:HOG000276369InParanoid:Q9S726IntAct:Q9S726InterPro:IPR004788InterPro:IPR020672
iPTMnet:Q9S726KEGG:00030+5.3.1.6KEGG:00051+5.3.1.6KEGG:00710+5.3.1.6KEGG:ath:AT3G04790KO:K01807OMA:TINNPYA
PANTHER:PTHR11934PaxDb:Q9S726Pfam:PF06026Pfam:Q9S726PhylomeDB:Q9S726PRIDE:Q9S726PRO:PR:Q9S726
ProMEX:Q9S726ProteinModelPortal:Q9S726Proteomes:UP000006548Reactome:R-ATH-71336RefSeq:NP_187130.1SMR:Q9S726STRING:3702.AT3G04790.1
SUPFAM:SSF100950SUPFAM:SSF75445TAIR:AT3G04790TIGRfam:TIGR00021TIGRFAMs:TIGR00021UniGene:At.24856UniGene:At.75369
UniGene:At.75595UniPathway:UPA00115UniProt:Q9S726
Coordinates (TAIR10) chr3:+:1313365..1314195
Molecular Weight (calculated) 29307.50 Da
IEP (calculated) 5.81
GRAVY (calculated) 0.12
Length 276 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLSFVSSS HLTLRTPSIA LRSTGSSPRT SVSFSVKAQS VALSQDDLKK LAAEKAVEAI KPGMVLGLGT GSTAAFAVDQ IGKLLSSGEL YDIVGIPTSK
101: RTEEQARSLG IPLVGLDTHP RIDLAIDGAD EVDPNLDLVK GRGGALLREK MVEAVADKFI VVADDTKLVT GLGGSGLAMP VEVVQFCWNF NLIRLQDLFK
201: EFGCESKLRV DGDGKPYVTD NSNYIIDLYF KTPLKDGFAA AKEIGKFQGV VEHGLFLGMA TSVIIAGKNG VEVMTK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)