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AT3G04780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1000)
Curator
Summary (TAIR10)
Encodes a protein with little sequence identity with any other protein of known structure or function. Part of this protein shows a 42% sequence identity with the C-terminal domain of the 32-kD human thioredoxin-like protein.
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Thioredoxin, core (InterPro:IPR015467), Proteasome-interacting thioredoxin-like domain, C-terminal (InterPro:IPR010400); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1000) (TAIR:AT2G25950.1); Has 606 Blast hits to 606 proteins in 196 species: Archae - 0; Bacteria - 0; Metazoa - 245; Fungi - 186; Plants - 75; Viruses - 0; Other Eukaryotes - 100 (source: NCBI BLink).
Protein Annotations
DisProt:DP00434DNASU:819638eggNOG:ENOG410YQ2GeggNOG:KOG0908
EMBL:AC009465EMBL:AC011437EMBL:AY058116EMBL:AY088225
EMBL:AY093713EMBL:CP002686EnsemblPlants:AT3G04780EnsemblPlants:AT3G04780.1
entrez:819638EvolutionaryTrace:Q9SQZ9Gene3D:2.60.120.470GeneID:819638
Genevisible:Q9SQZ9Gramene:AT3G04780.1hmmpanther:PTHR12175hmmpanther:PTHR12175:SF2
HOGENOM:HOG000240489InParanoid:Q9SQZ9InterPro:IPR008979InterPro:IPR010400
KEGG:ath:AT3G04780OMA:ECLNQSSPaxDb:Q9SQZ9PDB:1XOY
PDBsum:1XOYPfam:PF06201Pfam:Q9SQZ9Pfscan:PS51532
PhylomeDB:Q9SQZ9PRIDE:Q9SQZ9PRO:PR:Q9SQZ9PROSITE:PS51532
ProteinModelPortal:Q9SQZ9Proteomes:UP000006548Reactome:R-ATH-2559580Reactome:R-ATH-3299685
Reactome:R-ATH-499943Reactome:R-ATH-5628897Reactome:R-ATH-5676934Reactome:R-ATH-844456
RefSeq:NP_566238.1SMR:Q9SQZ9STRING:3702.AT3G04780.1SUPFAM:SSF49785
TAIR:AT3G04780UniGene:At.26620UniProt:Q9SQZ9
Coordinates (TAIR10) chr3:-:1311447..1313013
Molecular Weight (calculated) 19671.20 Da
IEP (calculated) 4.68
GRAVY (calculated) -0.46
Length 176 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAESASQIP KGQVDLLDFI DWSGVECLNQ SSSHSLPNAL KQGYREDEGL NLESDADEQL LIYIPFNQVI KLHSFAIKGP EEEGPKTVKF FSNKEHMCFS
101: NVNDFPPSDT AELTEENLKG KPVVLKYVKF QNVRSLTIFI EANQSGSEVT KVQKIALYGS TVETTDMKGL KKIEDH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)