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AT3G04770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31932409 (2020): plastid
  • PMID:31871212 (2020): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27943495 (2017): mitochondrion
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 40s ribosomal protein SA B
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
40s ribosomal protein SA B (RPSAb); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, chloroplast, membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S2 (InterPro:IPR001865), Ribosomal protein S2, conserved site (InterPro:IPR018130), Ribosomal protein S2, eukaryotic/archaeal (InterPro:IPR005707); BEST Arabidopsis thaliana protein match is: 40s ribosomal protein SA (TAIR:AT1G72370.1); Has 3452 Blast hits to 3450 proteins in 1205 species: Archae - 263; Bacteria - 1638; Metazoa - 562; Fungi - 334; Plants - 225; Viruses - 0; Other Eukaryotes - 430 (source: NCBI BLink).
Protein Annotations
DNASU:819637eggNOG:COG0052eggNOG:KOG0830EMBL:CP002686
EnsemblPlants:AT3G04770EnsemblPlants:AT3G04770.1entrez:819637ExpressionAtlas:F4J4W3
GeneID:819637GO:GO:0000028GO:GO:0000447GO:GO:0000461
GO:GO:0003735GO:GO:0006407GO:GO:0006412GO:GO:0009507
GO:GO:0016020GO:GO:0022626GO:GO:0022627GO:GO:0030686
Gramene:AT3G04770.1HAMAP:MF_03015hmmpanther:PTHR11489hmmpanther:PTHR11489:SF9
InterPro:IPR001865InterPro:IPR005707InterPro:IPR018130InterPro:IPR023591
InterPro:IPR027498OMA:RWICFSTPANTHER:PTHR11489PaxDb:F4J4W3
Pfam:PF00318PRIDE:F4J4W3PRINTS:PR00395PROSITE:PS00963
ProteinModelPortal:F4J4W3Proteomes:UP000006548RefSeq:NP_850515.1scanprosite:PS00963
SMR:F4J4W3STRING:3702.AT3G04770.1SUPFAM:SSF52313TAIR:AT3G04770
tair10-symbols:RPSAbTIGRfam:TIGR01012TIGRFAMs:TIGR01012UniGene:At.10372
UniProt:F4J4W3
Coordinates (TAIR10) chr3:-:1309465..1310846
Molecular Weight (calculated) 37302.10 Da
IEP (calculated) 10.19
GRAVY (calculated) -0.01
Length 332 amino acids
Sequence (TAIR10)
(BLAST)
001: MAANGVATAG RQVSEKEADI QMMLSADVHL GTKNCNYQME RYVFKRRDDG IYIINLGKTW DKLQMAARVI VAIENPKDII VQSARPYGQR AVLKFAQYTG
101: VNAIAGRHTP GTFTNQMQTS FSEPRLLILT DPRTDHQPIK EGALGNIPTI AFCDTDSPMG FVDIGIPANN KGKHSIGCLF WLLARMVLQM RGTILAAQKW
201: DVMVNSRNTI RTCVSPTPDK DLDLFLLCRW ICFSTGSPKK QSKRVMKKLK YRPIMEWLVV TSGPLLKYLM LHGLVKSNSQ FLLHLQLALP LLLDGRLLLF
301: QLLVGSKSSL ISLARTRLDV DLIFLFSRFG ED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)