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AT3G04760.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Pentatricopeptide repeat (PPR-like) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pentatricopeptide repeat (PPR-like) superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR-like) superfamily protein (TAIR:AT1G09900.1); Has 62164 Blast hits to 15231 proteins in 315 species: Archae - 6; Bacteria - 70; Metazoa - 1026; Fungi - 1135; Plants - 57538; Viruses - 0; Other Eukaryotes - 2389 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011437EMBL:AK221573
EMBL:AY056218EMBL:AY133775EMBL:CP002686EnsemblPlants:AT3G04760
EnsemblPlants:AT3G04760.1entrez:819636Gene3D:1.25.40.10GeneID:819636
Genevisible:Q9SR00GO:GO:0009507Gramene:AT3G04760.1hmmpanther:PTHR24015
hmmpanther:PTHR24015:SF572HOGENOM:HOG000238342InParanoid:Q9SR00InterPro:IPR002885
InterPro:IPR011990KEGG:ath:AT3G04760OMA:TPDAYSYPaxDb:Q9SR00
Pfam:PF12854Pfam:PF13041Pfam:Q9SR00Pfscan:PS51375
PhylomeDB:Q9SR00PRIDE:Q9SR00PRO:PR:Q9SR00PROSITE:PS51375
ProteinModelPortal:Q9SR00Proteomes:UP000006548RefSeq:NP_566237.1SMR:Q9SR00
STRING:3702.AT3G04760.1SUPFAM:SSF48452TAIR:AT3G04760TIGRfam:TIGR00756
TIGRFAMs:TIGR00756UniGene:At.18557UniProt:Q9SR00
Coordinates (TAIR10) chr3:-:1303884..1305692
Molecular Weight (calculated) 67699.00 Da
IEP (calculated) 5.92
GRAVY (calculated) -0.13
Length 602 amino acids
Sequence (TAIR10)
(BLAST)
001: MTPLSSELVG FTIPFYSKTQ KPYSNSSHGL LLSHNRSSLL TFSNSNPNND NGRSFSSSGA RNLQTTTTTD ATLPTERRQQ HSQSLGFRDT QMLKIFHRSC
101: RSGNYIESLH LLETMVRKGY NPDVILCTKL IKGFFTLRNI PKAVRVMEIL EKFGQPDVFA YNALINGFCK MNRIDDATRV LDRMRSKDFS PDTVTYNIMI
201: GSLCSRGKLD LALKVLNQLL SDNCQPTVIT YTILIEATML EGGVDEALKL MDEMLSRGLK PDMFTYNTII RGMCKEGMVD RAFEMVRNLE LKGCEPDVIS
301: YNILLRALLN QGKWEEGEKL MTKMFSEKCD PNVVTYSILI TTLCRDGKIE EAMNLLKLMK EKGLTPDAYS YDPLIAAFCR EGRLDVAIEF LETMISDGCL
401: PDIVNYNTVL ATLCKNGKAD QALEIFGKLG EVGCSPNSSS YNTMFSALWS SGDKIRALHM ILEMMSNGID PDEITYNSMI SCLCREGMVD EAFELLVDMR
501: SCEFHPSVVT YNIVLLGFCK AHRIEDAINV LESMVGNGCR PNETTYTVLI EGIGFAGYRA EAMELANDLV RIDAISEYSF KRLHRTFPLL NVLQRSSQTF
601: GY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)