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AT3G04750.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1); Has 37204 Blast hits to 13541 proteins in 229 species: Archae - 0; Bacteria - 9; Metazoa - 47; Fungi - 88; Plants - 36631; Viruses - 0; Other Eukaryotes - 429 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC011437EMBL:CP002686EnsemblPlants:AT3G04750EnsemblPlants:AT3G04750.1entrez:819635
Gene3D:1.25.40.10GeneID:819635Genevisible:Q9SR01GO:GO:0005739Gramene:AT3G04750.1hmmpanther:PTHR24015hmmpanther:PTHR24015:SF776
HOGENOM:HOG000237569InParanoid:Q9SR01InterPro:IPR002885InterPro:IPR011990iPTMnet:Q9SR01KEGG:ath:AT3G04750OMA:TLWTAMI
PaxDb:Q9SR01Pfam:PF01535Pfam:PF13041Pfam:Q9SR01Pfscan:PS51375PhylomeDB:Q9SR01PRIDE:Q9SR01
PRO:PR:Q9SR01PROSITE:PS51375ProteinModelPortal:Q9SR01Proteomes:UP000006548RefSeq:NP_187126.1SMR:Q9SR01STRING:3702.AT3G04750.1
TAIR:AT3G04750TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.53184UniProt:Q9SR01
Coordinates (TAIR10) chr3:-:1301391..1303376
Molecular Weight (calculated) 74771.20 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.06
Length 661 amino acids
Sequence (TAIR10)
(BLAST)
001: MCFVLLLRRG FRLFGTECGS KTTKWDPVQS LQLNHQSLVL LENCNSRNQF KQVLAQIMRF NLICDTFPMS RLIFFSAITY PENLDLAKLL FLNFTPNPNV
101: FVYNTMISAV SSSKNECFGL YSSMIRHRVS PDRQTFLYLM KASSFLSEVK QIHCHIIVSG CLSLGNYLWN SLVKFYMELG NFGVAEKVFA RMPHPDVSSF
201: NVMIVGYAKQ GFSLEALKLY FKMVSDGIEP DEYTVLSLLV CCGHLSDIRL GKGVHGWIER RGPVYSSNLI LSNALLDMYF KCKESGLAKR AFDAMKKKDM
301: RSWNTMVVGF VRLGDMEAAQ AVFDQMPKRD LVSWNSLLFG YSKKGCDQRT VRELFYEMTI VEKVKPDRVT MVSLISGAAN NGELSHGRWV HGLVIRLQLK
401: GDAFLSSALI DMYCKCGIIE RAFMVFKTAT EKDVALWTSM ITGLAFHGNG QQALQLFGRM QEEGVTPNNV TLLAVLTACS HSGLVEEGLH VFNHMKDKFG
501: FDPETEHYGS LVDLLCRAGR VEEAKDIVQK KMPMRPSQSM WGSILSACRG GEDIETAELA LTELLKLEPE KEGGYVLLSN IYATVGRWGY SDKTREAMEN
601: RGVKKTAGYS SVVGVEGLHR FVAAEKQNHP RWTEIKRILQ HLYNEMKPKL DCLDLLEIEI K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)