suba logo
AT3G04720.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : pathogenesis-related 4
Curator
Summary (TAIR10)
Encodes a protein similar to the antifungal chitin-binding protein hevein from rubber tree latex. mRNA levels increase in response to ethylene and turnip crinkle virus infection.
Computational
Description (TAIR10)
pathogenesis-related 4 (PR4); FUNCTIONS IN: chitin binding; INVOLVED IN: in 6 processes; LOCATED IN: endomembrane system; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Barwin (InterPro:IPR001153), Glycoside hydrolase, family 19, catalytic (InterPro:IPR000726), Barwin-related endoglucanase (InterPro:IPR009009), Chitin-binding, type 1, conserved site (InterPro:IPR018371), Barwin-like endoglucanase (InterPro:IPR014733), Barwin, conserved site (InterPro:IPR018226), Chitin-binding, type 1 (InterPro:IPR001002); BEST Arabidopsis thaliana protein match is: basic chitinase (TAIR:AT3G12500.1); Has 1702 Blast hits to 1458 proteins in 199 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 253; Plants - 1414; Viruses - 10; Other Eukaryotes - 25 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G04720-MONOMERCAZy:CBM18EC:3.1.-.-eggNOG:COG3979eggNOG:KOG4742EMBL:AC011437EMBL:AF370536
EMBL:AY088644EMBL:BT000046EMBL:CP002686EMBL:U01880EnsemblPlants:AT3G04720EnsemblPlants:AT3G04720.1entrez:819632
Gene3D:2.40.40.10Gene3D:3.30.60.10GeneID:819632Genevisible:P43082GO:GO:0004540GO:GO:0005773GO:GO:0008061
GO:GO:0009615GO:GO:0009627GO:GO:0009651GO:GO:0009723GO:GO:0009817GO:GO:0031640GO:GO:0042742
GO:GO:0080027GO:GO:0090501Gramene:AT3G04720.1hmmpanther:PTHR22595hmmpanther:PTHR22595:SF62HOGENOM:HOG000090989InParanoid:P43082
IntAct:P43082InterPro:IPR001002InterPro:IPR001153InterPro:IPR009009InterPro:IPR018226InterPro:IPR018371KEGG:ath:AT3G04720
OMA:QFVDCGNPaxDb:P43082Pfam:P43082Pfam:PF00187Pfam:PF00967Pfscan:PS50941Pfscan:PS51174
PhylomeDB:P43082PRIDE:P43082PRINTS:PR00451PRINTS:PR00602PRO:PR:P43082ProDom:PD000609ProDom:PD004535
PROSITE:PS00026PROSITE:PS00771PROSITE:PS00772PROSITE:PS50941PROSITE:PS51174ProteinModelPortal:P43082Proteomes:UP000006548
RefSeq:NP_187123.1scanprosite:PS00026scanprosite:PS00771scanprosite:PS00772SMART:SM00270SMR:P43082STRING:3702.AT3G04720.1
SUPFAM:SSF50685SUPFAM:SSF57016TAIR:AT3G04720tair10-symbols:HELtair10-symbols:PR-4tair10-symbols:PR4UniGene:At.252
UniProt:P43082
Coordinates (TAIR10) chr3:-:1285691..1286531
Molecular Weight (calculated) 22937.80 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.33
Length 212 amino acids
Sequence (TAIR10)
(BLAST)
001: MKIRLSITII LLSYTVATVA GQQCGRQGGG RTCPGNICCS QYGYCGTTAD YCSPTNNCQS NCWGSGPSGP GESASNVRAT YHFYNPAQNN WDLRAVSAYC
101: STWDADKPYA WRSKYGWTAF CGPAGPRGQA SCGKCLRVKN TRTNAAVTVR IVDQCSNGGL DLDVAMFNQI DTDGFGYQQG HLIVDYQFVD CGNELIGQPD
201: SRNMLVSAID RV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)