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AT3G04710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.989
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ankyrin repeat family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Ankyrin repeat-containing domain (InterPro:IPR020683), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT4G12400.2); Has 102393 Blast hits to 40007 proteins in 1636 species: Archae - 288; Bacteria - 12620; Metazoa - 45538; Fungi - 10843; Plants - 6349; Viruses - 1271; Other Eukaryotes - 25484 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0666eggNOG:KOG0504eggNOG:KOG0548eggNOG:KOG4197EMBL:AC011437EMBL:AK175477EMBL:AY084331
EMBL:AY136361EMBL:BT000201EMBL:CP002686EnsemblPlants:AT3G04710EnsemblPlants:AT3G04710.1entrez:819629ExpressionAtlas:Q9SR03
Gene3D:1.25.40.10Gene3D:1.25.40.20GeneID:819629Gramene:AT3G04710.1hmmpanther:PTHR22904hmmpanther:PTHR22904:SF326HOGENOM:HOG000237562
IntAct:Q9SR03InterPro:IPR002110InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR020683ncoils:Coil
Pfam:PF12796Pfam:PF13414Pfscan:PS50005Pfscan:PS50088Pfscan:PS50293Pfscan:PS50297PhylomeDB:Q9SR03
PRINTS:PR01415PROSITE:PS50005PROSITE:PS50088PROSITE:PS50293PROSITE:PS50297Proteomes:UP000006548RefSeq:NP_187122.1
SMART:SM00028SMART:SM00248SMR:Q9SR03STRING:3702.AT3G04710.3SUPFAM:SSF48403SUPFAM:SSF48452TAIR:AT3G04710
tair10-symbols:TPR10UniGene:At.40792UniProt:Q9SR03
Coordinates (TAIR10) chr3:+:1278229..1280942
Molecular Weight (calculated) 49262.00 Da
IEP (calculated) 4.92
GRAVY (calculated) -0.41
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPDASTALA AREKVQQILN AACTGNLEFL KNVAKQLDEG KDLTKTVESI KDANKRGALH FAAREGQTEI CRYLLEELKL NADAKDETGD TPLVHAARQG
101: QIETVKYLLE QGADPNIASE LGATALHHAA GTGEIELLKE LLSRGVPVDS ESESGTPLIW AAGHDQKNAV EVLLEHNANP NAETEDNITP LLSAVAAGSL
201: SCLELLVKAG AKANVFAGGA TPLHIAADIG NLELINCLLK AGADPNQKDE EGNRPLEVAA ARDNRKVVEI LFPLTTKPET VSDWTVDGIL AHMESNKEQE
301: ENSNKAKSQE TGIKKDLPVV SPEAKAKAAE AKARGQDAFH RKDFQMAIDA YTQAIDFDPT DHTLFSNRSL CWLRLGQAEH ALSDAKACRE LNPDWPKGCF
401: REGAALRLLQ RFDEAANAFY EGVLLSPESK ELIDAFREAV DAGRKFHGKG EVKAKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)