suba logo
AT3G04550.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410II4HeggNOG:ENOG410YKCBEMBL:AC011437EMBL:AY034914EMBL:AY062440EMBL:AY063107EMBL:AY114629
EMBL:CP002686EnsemblPlants:AT3G04550EnsemblPlants:AT3G04550.1entrez:819611GeneID:819611Genevisible:Q9SR19GO:GO:0009507
GO:GO:0009570GO:GO:0080158Gramene:AT3G04550.1hmmpanther:PTHR35299hmmpanther:PTHR35299:SF2HOGENOM:HOG000243466InParanoid:Q9SR19
KEGG:ath:AT3G04550OMA:SRENKNPPaxDb:Q9SR19PDB:4WT3PDB:4WT4PDB:4WT5PDBsum:4WT3
PDBsum:4WT4PDBsum:4WT5Pfam:Q9SR19PhylomeDB:Q9SR19PRIDE:Q9SR19PRO:PR:Q9SR19ProMEX:Q9SR19
Proteomes:UP000006548RefSeq:NP_566230.1SMR:Q9SR19STRING:3702.AT3G04550.1TAIR:AT3G04550UniGene:At.48619UniGene:At.71013
UniProt:Q9SR19
Coordinates (TAIR10) chr3:+:1225961..1227310
Molecular Weight (calculated) 50202.00 Da
IEP (calculated) 5.68
GRAVY (calculated) -0.38
Length 449 amino acids
Sequence (TAIR10)
(BLAST)
001: MFSLKSLISS PFTQSTTHGL FTNPITRPVN PLPRTVSFTV TASMIPKRSS ANMIPKNPPA RQQLYQPFRP PSSPIPTQFR SLDSAGKIEI LAGRMALWFE
101: YAPLISSLYT DGFTPPTIEE LTGISSIEQN RLIVGAQVRD SILQSIHEPE LISAFDTGGA ELLYEIRLLS TTQRVAAATF IIDRNIDSKG AQDLARAIKD
201: YPNRRGDVGW LDFDYNLPGD CLSFLYYRQS RENKNPSDQR TSMLLQALGV AESEKAKNRL NTELYGDKEA EKEKEKKKKE EEVKAIRIPV VRLKFGEVAE
301: ATSVVVLPVC KAEEGEKKIL EAPMEIIAGG DFKVVEAEKG WKRWVVLPSW NPVAAIGKGG VAVSFRDDRK VLPWDGKEEP LLVVADRVRN VVEADDGYYL
401: VVAENGLKLE KGSDLKAREV KESLGMVVLV VRPPREDDDD WQTSHQNWD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)