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AT3G04510.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF640)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LIGHT SENSITIVE HYPOCOTYLS 2 (LSH2); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 4 leaf senescence stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF640 (InterPro:IPR006936); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF640) (TAIR:AT5G28490.1); Has 309 Blast hits to 309 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 12; Fungi - 0; Plants - 297; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JJZUeggNOG:ENOG410ZRQ9EMBL:AC022287EMBL:AY630774
EMBL:AY924763EMBL:CP002686EnsemblPlants:AT3G04510EnsemblPlants:AT3G04510.1
entrez:819607GeneID:819607Genevisible:Q9M836GO:GO:0003677
GO:GO:0005634GO:GO:0006355GO:GO:0009299GO:GO:0009886
Gramene:AT3G04510.1hmmpanther:PTHR31165hmmpanther:PTHR31165:SF13HOGENOM:HOG000239606
InParanoid:Q9M836InterPro:IPR006936KEGG:ath:AT3G04510OMA:MANYHHG
PaxDb:Q9M836Pfam:PF04852Pfam:Q9M836Pfscan:PS51697
PhylomeDB:Q9M836PRO:PR:Q9M836PROSITE:PS51697Proteomes:UP000006548
RefSeq:NP_187101.1STRING:3702.AT3G04510.1TAIR:AT3G04510tair10-symbols:LSH2
UniGene:At.66526UniProt:Q9M836
Coordinates (TAIR10) chr3:-:1215812..1216417
Molecular Weight (calculated) 22775.60 Da
IEP (calculated) 10.21
GRAVY (calculated) -0.97
Length 201 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLISQNHNN RNPNTSLSTQ TPSSFSSPPS SSRYENQKRR DWNTFCQYLR NHHPPLSLAS CSGAHVLDFL RYLDQFGKTK VHHQNCAFFG LPNPPAPCPC
101: PLRQAWGSLD ALIGRLRAAY EENGGAPETS PFGSRSVRIF LREVRDFQAK SRGVSYEKKR KRVNNKQITQ SQPQSQPPLP QQPQQEQGQS MMANYHHGAT
201: Q
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)