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AT3G04470.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.960
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ankyrin repeat family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ankyrin repeat family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ankyrin repeat-containing domain (InterPro:IPR020683), Protein of unknown function DUF3424 (InterPro:IPR021832), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT1G04780.1); Has 1133 Blast hits to 894 proteins in 124 species: Archae - 0; Bacteria - 10; Metazoa - 597; Fungi - 29; Plants - 361; Viruses - 4; Other Eukaryotes - 132 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XNMSeggNOG:KOG0522EMBL:AC022287EMBL:CP002686EnsemblPlants:AT3G04470EnsemblPlants:AT3G04470.1entrez:819603
Gene3D:1.25.40.20GeneID:819603GO:GO:0005886Gramene:AT3G04470.1hmmpanther:PTHR12447hmmpanther:PTHR12447:SF8HOGENOM:HOG000239603
IntAct:Q9M840InterPro:IPR002110InterPro:IPR020683InterPro:IPR021832KEGG:ath:AT3G04470OMA:SDHANEDPANTHER:PTHR12447
Pfam:PF11904Pfscan:PS50088Pfscan:PS50297PhylomeDB:Q9M840PROSITE:PS50088PROSITE:PS50297Proteomes:UP000006548
RefSeq:NP_566227.3SMR:Q9M840SUPFAM:SSF48403TAIR:AT3G04470UniGene:At.28003UniGene:At.73051UniProt:Q9M840
Coordinates (TAIR10) chr3:-:1189841..1191853
Molecular Weight (calculated) 71504.40 Da
IEP (calculated) 7.24
GRAVY (calculated) -0.65
Length 640 amino acids
Sequence (TAIR10)
(BLAST)
001: MEDYSKYTHS PAHLAVVLRD HAALRRIVSD LPRLAKAGEV TTEAESMESE SRADSVSAVI DRRDVPGRET PLHLAVRLRD PVSAEILMSA GADWSLQNEN
101: GWSALQEAVC TREEAIAMII ARHYQPLAWA KWCRRLPRII ASASRIRDFY MEITFHFESS VIPFIGRIAP SDTYRIWKRG SNLRADMTLA GFDGFKIQRS
201: DQTFLFLGDG YSSEDGKMSL SPGSLIVLSH KEKEMTNALE GAGAQPTDAE VAHEVALMSQ TNMYRPGIDV TQAELVSHLN WRRQERTEMV GNWKAKVYDM
301: LHVMVSVKSR RVPGAMTDEE LFAVDEERTA VTNGAETDGF EDVLTPEERL QLNSALQTGN SDAIEDEECE VTDQQENGAL KDKKGWFGWN KKGSNTEDTK
401: LKKGSKSAPE DGNQKGKSQK SSMVSDHANE DHGDAKKGKE KKKKKKGVAG DEVKRESEYK KGLRPVLWLT PDFPLTTDEL LPLLDILANK VKAVRRLREL
501: LTTKLPLGTF PVKLAIPIIP TVRVVVTFTK FEELQAAEEE FSTPPSSPVF HDAKSSSSEN SSPSWISWMR SGKSSDNDSN RYKDEADPFL IPSDYKWIDS
601: AEKKRRMKAK KAKSRRKKQA ATKAAGASDS GTRSNHVAEE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)