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AT3G04460.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
peroxisome 1.000
ASURE: peroxisome
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : peroxin-12
Curator
Summary (TAIR10)
RING finger protein involved in peroxisome biogenesis. Also involved in peroxisomal import of nitric oxide synthase.
Computational
Description (TAIR10)
peroxin-12 (PEX12); FUNCTIONS IN: zinc ion binding; INVOLVED IN: protein import into peroxisome matrix, fatty acid beta-oxidation, peroxisome organization, embryonic morphogenesis; LOCATED IN: peroxisomal membrane, peroxisome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Pex, N-terminal (InterPro:IPR006845), Peroxisome assembly, p12 (InterPro:IPR017375); Has 364 Blast hits to 340 proteins in 170 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 134; Plants - 57; Viruses - 0; Other Eukaryotes - 34 (source: NCBI BLink).
Protein Annotations
BioGrid:4937eggNOG:ENOG410Y4Q2eggNOG:KOG0826EMBL:AC022287EMBL:AK117651EMBL:BX824646EMBL:CP002686
EnsemblPlants:AT3G04460EnsemblPlants:AT3G04460.1entrez:819602Gene3D:3.30.40.10GeneID:819602Genevisible:Q9M841GO:GO:0004842
GO:GO:0005777GO:GO:0005778GO:GO:0005779GO:GO:0006513GO:GO:0006635GO:GO:0007031GO:GO:0008270
GO:GO:0016558GO:GO:0048598GO:GO:1990429Gramene:AT3G04460.1hmmpanther:PTHR12888hmmpanther:PTHR12888:SF0HOGENOM:HOG000038427
InParanoid:Q9M841IntAct:Q9M841InterPro:IPR006845InterPro:IPR013083InterPro:IPR017375KEGG:ath:AT3G04460KO:K13345
OMA:FHYVRSHPANTHER:PTHR12888PaxDb:Q9M841Pfam:PF04757Pfam:PF13923Pfam:Q9M841PhylomeDB:Q9M841
PIRSF:PIRSF038074PRIDE:Q9M841PRO:PR:Q9M841ProteinModelPortal:Q9M841Proteomes:UP000006548RefSeq:NP_187096.2SMR:Q9M841
STRING:3702.AT3G04460.1SUPFAM:SSF57850TAIR:AT3G04460tair10-symbols:APM4tair10-symbols:ATPEX12tair10-symbols:PEX12TCDB:3.A.20.1.2
UniGene:At.18851UniProt:Q9M841
Coordinates (TAIR10) chr3:+:1186641..1189094
Molecular Weight (calculated) 44402.70 Da
IEP (calculated) 9.10
GRAVY (calculated) -0.13
Length 393 amino acids
Sequence (TAIR10)
(BLAST)
001: MLFQVGGEGT RPTFFEMAAA QQLPASLRAA LTYSLGVFAL RRSFLHKILD YEDEFFAALM LILEGHSLRT TDGSFAESLY GLRRKSARLR LRKDSARKDS
101: SEEVQHSGLE KRQRILSVVF LVVLPYFKSK LHAIYNKERE ARLRESLWGA EDQGFDEADF FTGDDSIVSR EPSGNEELSV RVQLATKIKK FIAVCYPWIH
201: ASSEGLSFTY QLLYLLDATG FYSLGLQALG IQVCRATGQE LMDTSSRISK IRNHERERLR GPPWLKTVQG ALLSCSYAVL DYAQTGLIAA VFIFKMMEWW
301: YQSAEERLSA PTVYPPPPPP PAPKMAKEGI PLPPDRSLCA LCLQKRANPS VVTVSGFVFC YSCVFKYVSK YKRCPVTLIP ASVDQIRRLF QDT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)