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AT3G04360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.518
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Calcium-dependent lipid-binding (CaLB domain) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Calcium-dependent lipid-binding (CaLB domain) family protein; CONTAINS InterPro DOMAIN/s: C2 membrane targeting protein (InterPro:IPR018029), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), C2 calcium-dependent membrane targeting (InterPro:IPR000008); BEST Arabidopsis thaliana protein match is: Calcium-dependent lipid-binding (CaLB domain) family protein (TAIR:AT1G04540.1); Has 385 Blast hits to 364 proteins in 38 species: Archae - 0; Bacteria - 22; Metazoa - 10; Fungi - 6; Plants - 333; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IYCPeggNOG:ENOG410Z4Q6EMBL:CP002686EnsemblPlants:AT3G04360EnsemblPlants:AT3G04360.1entrez:819591Gene3D:2.60.40.150
GeneID:819591Gramene:AT3G04360.1hmmpanther:PTHR32246hmmpanther:PTHR32246:SF16InParanoid:F4J3N4InterPro:IPR000008KEGG:ath:AT3G04360
OMA:EHRVERWPaxDb:F4J3N4Pfam:PF00168Pfscan:PS50004PRIDE:F4J3N4PROSITE:PS50004ProteinModelPortal:F4J3N4
Proteomes:UP000006548RefSeq:NP_566225.4SMART:SM00239SUPFAM:SSF49562TAIR:AT3G04360UniGene:At.40850UniProt:F4J3N4
Coordinates (TAIR10) chr3:-:1157025..1158200
Molecular Weight (calculated) 41460.90 Da
IEP (calculated) 10.37
GRAVY (calculated) -0.50
Length 391 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRLKFACPV LEINLISAQD LAPVSRNMKT YSVAWINTDP MRKLTTRVDQ SNRANPIWNE KFVFRVNDKI LYVDASAIVI EIYAAAWAKD ALVGTVNVLL
101: SDLFAPWSGF GDGNDGGGGN NNMRLVTLQI RRPSGRLQGF LRLGVALLDG GQRSMPLSIE VFDGSRKGER NSVKRDQEAS RMMHRRTNSD QTDLTTSTND
201: YGVKTGVVTG NGGGGGGGGG IVVGADSMVN GSLCSSDIGP SASVVAAAIA QGLYNRQKTA VKAANKEDAS SILEGKTEGI EHRVERWRAE KNGTGGAGGA
301: AGSSDDSSGK GGAGRRRRRR RRKEKQQGRR NGGGEGKKGL FSCFGNVFGC EISITCGGGS GGEGDSTKKR YNNNKVVNLS AVDETFSHSA T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)