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AT3G04340.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FtsH extracellular protease family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
embryo defective 2458 (emb2458); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 32899 Blast hits to 29484 proteins in 3073 species: Archae - 1598; Bacteria - 9893; Metazoa - 6215; Fungi - 3644; Plants - 2880; Viruses - 25; Other Eukaryotes - 8644 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0465eggNOG:KOG0731EMBL:AC016829EMBL:AY080629EMBL:CP002686EnsemblPlants:AT3G04340EnsemblPlants:AT3G04340.1
entrez:819589Gene3D:3.40.50.300GeneID:819589Genevisible:F4J3N2GO:GO:0004176GO:GO:0004222GO:GO:0005524
GO:GO:0005739GO:GO:0006508GO:GO:0008237GO:GO:0009506GO:GO:0009507GO:GO:0009941GO:GO:0016021
GO:GO:0031969Gramene:AT3G04340.1hmmpanther:PTHR23076hmmpanther:PTHR23076:SF58HOGENOM:HOG000030588InParanoid:F4J3N2InterPro:IPR000642
InterPro:IPR003593InterPro:IPR003959InterPro:IPR027417KEGG:ath:AT3G04340ncoils:CoilOMA:SWFATFSPaxDb:F4J3N2
Pfam:PF00004Pfam:PF01434PRIDE:F4J3N2ProteinModelPortal:F4J3N2Proteomes:UP000006548RefSeq:NP_187084.6SMART:SM00382
SMR:F4J3N2STRING:3702.AT3G04340.1SUPFAM:SSF140990SUPFAM:SSF52540TAIR:AT3G04340tair10-symbols:emb2458UniGene:At.40851
UniProt:F4J3N2
Coordinates (TAIR10) chr3:-:1146943..1153341
Molecular Weight (calculated) 152266.00 Da
IEP (calculated) 9.14
GRAVY (calculated) -0.35
Length 1320 amino acids
Sequence (TAIR10)
(BLAST)
0001: MDFISASSLS SPFSTQLSPI YLSSGIVSLK PRHRVKNRNF GSRESNNKSR KIVPIRGCFG FSGSFLRSKQ SDYGSEAVSE SLRLCGEGNE LVLSSEYNSA
0101: KTRESVIQFV TKPLVYALFC IAIGLSPIRS FQAPALAVPF VSDVIWKKKK ERVREKEVVL KAVDHEFSDY TRRLLETVSV LLKTIEIVRK ENGEVAEVGA
0201: ALDAVKVEKE KLQKEIMSGL YRDMRRLRKE RDLLMKRADK IVDEALSLKK QSEKLLRKGA REKMEKLEES VDIMESEYNK IWERIDEIDD IILKKETTTL
0301: SFGVRELIFI ERECVELVKS FNRELNQKSF ESVPESSITK LSRSEIKQEL VNAQRKHLEQ MILPNVLELE EVDPFFDRDS VDFSLRIKKR LEESKKLQRD
0401: LQNRIRKRMK KFGEEKLFVQ KTPEGEAVKG FPEAEVKWMF GEKEVVVPKA IQLHLRHGWK KWQEEAKADL KQKLLEDVDF GKQYIAQRQE QVLLDRDRVV
0501: SKTWYNEDKS RWEMDPMAVP YAVSRKLIDS ARIRHDYAVM YVALKGDDKE FYVDIKEYEM LFEKFGGFDA LYLKMLACGI PTSVHLMWIP MSELSLQQQF
0601: LLVTRVVSRV FNALRKTQVV SNAKDTVLEK IRNINDDIMM AVVFPVIEFI IPYQLRLRLG MAWPEEIEQT VGSTWYLQWQ SEAEMNFKSR NTEDFQWFLW
0701: FLIRSSIYGF VLYHVFRFLK RKVPRLLGYG PFRRDPNVRK FWRVKSYFTY RKRRIKQKRK AGIDPIKTAF DRMKRVKNPP IPLKNFASIE SMREEINEVV
0801: AFLQNPKAFQ EMGARAPRGV LIVGERGTGK TSLALAIAAE ARVPVVNVEA QELEAGLWVG QSAANVRELF QTARDLAPVI IFVEDFDLFA GVRGKFVHTK
0901: QQDHESFINQ LLVELDGFEK QDGVVLMATT RNHKQIDEAL RRPGRMDRVF HLQSPTEMER ERILHNAAEE TMDRELVDLV DWRKVSEKTT LLRPIELKLV
1001: PMALESSAFR SKFLDTDELL SYVSWFATFS HIVPPWLRKT KVAKTMGKML VNHLGLNLTK DDLENVVDLM EPYGQISNGI ELLNPTVDWT RETKFPHAVW
1101: AAGRALITLL IPNFDVVENL WLEPSSWEGI GCTKITKVTS GGSAIGNTES RSYLEKKLVF CFGSHIASQM LLPPGDENFL SSSEITKAQE IATRMVLQYG
1201: WGPDDSPAVY YATNAVSALS MGNNHEYEMA GKVEKIYDLA YEKAKGMLLK NRRVLEKITE ELLEFEILTH KDLERIVHEN GGIREKEPFF LSGTNYNEAL
1301: SRSFLDVGDP PETALLSAPT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)