AT3G04340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FtsH extracellular protease family | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
embryo defective 2458 (emb2458); FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, metalloendopeptidase activity, nucleotide binding, ATP binding; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), Peptidase M41 (InterPro:IPR000642); BEST Arabidopsis thaliana protein match is: FTSH protease 1 (TAIR:AT1G50250.1); Has 32899 Blast hits to 29484 proteins in 3073 species: Archae - 1598; Bacteria - 9893; Metazoa - 6215; Fungi - 3644; Plants - 2880; Viruses - 25; Other Eukaryotes - 8644 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1146943..1153341 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 152266.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.14 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.35 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1320 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MDFISASSLS SPFSTQLSPI YLSSGIVSLK PRHRVKNRNF GSRESNNKSR KIVPIRGCFG FSGSFLRSKQ SDYGSEAVSE SLRLCGEGNE LVLSSEYNSA 0101: KTRESVIQFV TKPLVYALFC IAIGLSPIRS FQAPALAVPF VSDVIWKKKK ERVREKEVVL KAVDHEFSDY TRRLLETVSV LLKTIEIVRK ENGEVAEVGA 0201: ALDAVKVEKE KLQKEIMSGL YRDMRRLRKE RDLLMKRADK IVDEALSLKK QSEKLLRKGA REKMEKLEES VDIMESEYNK IWERIDEIDD IILKKETTTL 0301: SFGVRELIFI ERECVELVKS FNRELNQKSF ESVPESSITK LSRSEIKQEL VNAQRKHLEQ MILPNVLELE EVDPFFDRDS VDFSLRIKKR LEESKKLQRD 0401: LQNRIRKRMK KFGEEKLFVQ KTPEGEAVKG FPEAEVKWMF GEKEVVVPKA IQLHLRHGWK KWQEEAKADL KQKLLEDVDF GKQYIAQRQE QVLLDRDRVV 0501: SKTWYNEDKS RWEMDPMAVP YAVSRKLIDS ARIRHDYAVM YVALKGDDKE FYVDIKEYEM LFEKFGGFDA LYLKMLACGI PTSVHLMWIP MSELSLQQQF 0601: LLVTRVVSRV FNALRKTQVV SNAKDTVLEK IRNINDDIMM AVVFPVIEFI IPYQLRLRLG MAWPEEIEQT VGSTWYLQWQ SEAEMNFKSR NTEDFQWFLW 0701: FLIRSSIYGF VLYHVFRFLK RKVPRLLGYG PFRRDPNVRK FWRVKSYFTY RKRRIKQKRK AGIDPIKTAF DRMKRVKNPP IPLKNFASIE SMREEINEVV 0801: AFLQNPKAFQ EMGARAPRGV LIVGERGTGK TSLALAIAAE ARVPVVNVEA QELEAGLWVG QSAANVRELF QTARDLAPVI IFVEDFDLFA GVRGKFVHTK 0901: QQDHESFINQ LLVELDGFEK QDGVVLMATT RNHKQIDEAL RRPGRMDRVF HLQSPTEMER ERILHNAAEE TMDRELVDLV DWRKVSEKTT LLRPIELKLV 1001: PMALESSAFR SKFLDTDELL SYVSWFATFS HIVPPWLRKT KVAKTMGKML VNHLGLNLTK DDLENVVDLM EPYGQISNGI ELLNPTVDWT RETKFPHAVW 1101: AAGRALITLL IPNFDVVENL WLEPSSWEGI GCTKITKVTS GGSAIGNTES RSYLEKKLVF CFGSHIASQM LLPPGDENFL SSSEITKAQE IATRMVLQYG 1201: WGPDDSPAVY YATNAVSALS MGNNHEYEMA GKVEKIYDLA YEKAKGMLLK NRRVLEKITE ELLEFEILTH KDLERIVHEN GGIREKEPFF LSGTNYNEAL 1301: SRSFLDVGDP PETALLSAPT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)