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AT3G04290.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31673584 (2019): extracellular region plant-type cell wall
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:28818374 (2017): extracellular region plant-type cell wall
  • PMID:28155257 (2017): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Li-tolerant lipase 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Li-tolerant lipase 1 (LTL1); FUNCTIONS IN: hydrolase activity, acting on ester bonds, carboxylesterase activity; INVOLVED IN: lipid metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: Lipase, GDSL (InterPro:IPR001087), Esterase, SGNH hydrolase-type (InterPro:IPR013830); BEST Arabidopsis thaliana protein match is: GDSL-like Lipase/Acylhydrolase superfamily protein (TAIR:AT5G33370.1); Has 3364 Blast hits to 3325 proteins in 174 species: Archae - 0; Bacteria - 234; Metazoa - 0; Fungi - 3; Plants - 3111; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G04290-MONOMEREC:3.1.1.-eggNOG:COG3240eggNOG:ENOG410IKMV
EMBL:AC016829EMBL:AY085128EMBL:CP002686EnsemblPlants:AT3G04290
EnsemblPlants:AT3G04290.1entrez:819584Gene3D:3.40.50.1110GeneID:819584
Genevisible:Q9M8Y5GO:GO:0005576GO:GO:0009751GO:GO:0010226
GO:GO:0016042GO:GO:0016788GO:GO:0042538Gramene:AT3G04290.1
hmmpanther:PTHR22835hmmpanther:PTHR22835:SF160HOGENOM:HOG000237649InParanoid:Q9M8Y5
InterPro:IPR001087InterPro:IPR013830KEGG:ath:AT3G04290OMA:NCSPLGF
PaxDb:Q9M8Y5Pfam:PF00657Pfam:Q9M8Y5PhylomeDB:Q9M8Y5
PRIDE:Q9M8Y5PRO:PR:Q9M8Y5ProteinModelPortal:Q9M8Y5Proteomes:UP000006548
RefSeq:NP_187079.1STRING:3702.AT3G04290.1SUPFAM:SSF52266TAIR:AT3G04290
tair10-symbols:ATLTL1tair10-symbols:LTL1TMHMM:TMhelixUniGene:At.18785
UniProt:Q9M8Y5
Coordinates (TAIR10) chr3:-:1133620..1136223
Molecular Weight (calculated) 40151.30 Da
IEP (calculated) 5.69
GRAVY (calculated) 0.11
Length 366 amino acids
Sequence (TAIR10)
(BLAST)
001: MNINCSPLGF LISLFFIVTF LAPQVKSRAF FVFGDSLVDN GNNDYLVTTA RADNYPYGID YPTRRPTGRF SNGLNIPDII SEAIGMPSTL PYLSPHLTGE
101: NLLVGANFAS AGIGILNDTG IQFVNIIRIS KQMEYFEQYQ LRVSALIGPE ATQQLVNQAL VLITLGGNDF VNNYYLIPFS ARSRQYALPD YVVYLISEYG
201: KILRKLYELG ARRVLVTGTG AMGCAPAELA QHSRNGECYG ALQTAAALFN PQLVDLIASV NAEIGQDVFV AANAYQMNMD YLSNPEQFGF VTSKVACCGQ
301: GPYNGIGLCT PVSNLCPNRD LYAFWDAFHP TEKANRIIVN QILTGSSKYM HPMNLSTAML LDSSKI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)