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AT3G04170.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28003327 (2017): extracellular region apoplast
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RmlC-like cupins superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929), Germin, manganese binding site (InterPro:IPR019780); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04150.1); Has 1493 Blast hits to 1488 proteins in 87 species: Archae - 0; Bacteria - 18; Metazoa - 0; Fungi - 17; Plants - 1446; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
EMBL:AC016829EMBL:BT014944EMBL:CP002686EnsemblPlants:AT3G04170
EnsemblPlants:AT3G04170.1entrez:819572Gene3D:2.60.120.10GeneID:819572
Genevisible:Q9M8X3GO:GO:0030145GO:GO:0045735GO:GO:0048046
Gramene:AT3G04170.1hmmpanther:PTHR31238hmmpanther:PTHR31238:SF44HOGENOM:HOG000235000
InParanoid:Q9M8X3InterPro:IPR001929InterPro:IPR006045InterPro:IPR011051
InterPro:IPR014710InterPro:IPR019780KEGG:ath:AT3G04170OMA:VQFHANI
PaxDb:Q9M8X3Pfam:PF00190Pfam:Q9M8X3Pfscan:PS51257
PhylomeDB:Q9M8X3PRIDE:Q9M8X3PRINTS:PR00325PRO:PR:Q9M8X3
PROSITE:PS00725ProteinModelPortal:Q9M8X3Proteomes:UP000006548RefSeq:NP_187067.1
scanprosite:PS00725SMART:SM00835SMR:Q9M8X3STRING:3702.AT3G04170.1
SUPFAM:SSF51182TAIR:AT3G04170UniGene:At.40888UniProt:Q9M8X3
Coordinates (TAIR10) chr3:-:1094765..1095616
Molecular Weight (calculated) 24425.70 Da
IEP (calculated) 8.30
GRAVY (calculated) 0.27
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MKYPFQCFLA KIILLALASS FVSCYDPSPL QDYCVAVPEK NGVFVNGEFC KDPKLVTSDD FFASGLNIPG NTNKRLGSFV NPANIPGLNT LGVGIARIDF
101: APGGLIPPHI HPRASEIILV IKGKLLVGFV SSNDYNYTLF SKILYPGDVF VHPIGLVQFH ANIGKTNAVA IGAVGSQNPG YISVGDAVFG SKPPIDPKIL
201: AKAFALDINI VRYLRKVFSP QDDIVND
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)