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AT3G04160.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 1711 Blast hits to 1353 proteins in 195 species: Archae - 0; Bacteria - 64; Metazoa - 693; Fungi - 201; Plants - 207; Viruses - 0; Other Eukaryotes - 546 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IIGVeggNOG:ENOG4111MIFEMBL:AC016829EMBL:CP002686EnsemblPlants:AT3G04160EnsemblPlants:AT3G04160.1EnsemblPlants:AT3G04160.2
entrez:819571ExpressionAtlas:Q9M8X2GeneID:819571Genevisible:Q9M8X2GO:GO:0005681GO:GO:0006397GO:GO:0008380
GO:GO:0046872hmmpanther:PTHR21402hmmpanther:PTHR21402:SF10HOGENOM:HOG000153254InterPro:IPR022776InterPro:IPR032845KEGG:ath:AT3G04160
KO:K13156ncoils:CoilOMA:RPIIDHDPANTHER:PTHR21402:SF10PaxDb:Q9M8X2Pfam:PF05253Pfam:Q9M8X2
PhylomeDB:Q9M8X2PRIDE:Q9M8X2PRO:PR:Q9M8X2Proteomes:UP000006548RefSeq:NP_001189804.1RefSeq:NP_187066.1STRING:3702.AT3G04160.2
TAIR:AT3G04160UniGene:At.53176UniProt:Q9M8X2
Coordinates (TAIR10) chr3:-:1091647..1094296
Molecular Weight (calculated) 81971.70 Da
IEP (calculated) 7.71
GRAVY (calculated) -0.78
Length 712 amino acids
Sequence (TAIR10)
(BLAST)
001: MDRPPSLPHY QNPNPNLFYH YPPPNSNPNF FFRPPPPPLQ NPNNYSIVPS PPPIRELSGT LSSLKSLLSE CQRTLDSLSQ NLALDHSSLL QKDENGCFVR
101: CPFDSNHFMP PEALFLHSLR CPNTLDLIHL LESFSSYRNT LELPCELQLN NGDGDLCISL DDLADFGSNF FYRDCPGAVK FSELDGKKRT LTLPHVLSVE
201: CSDFVGSDEK VKKIVLDKCL GVLPSDLCAM KNEIDQWRDF PSSYSSSVLS SIVGSKVVEI SALRKWILVN STRYGVIIDT FMRDHIFLLF RLCLKSAVKE
301: ACGFRMESDA TDVGEQKIMS CKSSTFECPV FIQVLSWLAS QLAVLYGEGN GKFFALDMFK QCIVESASQV MLFRLEGTRS KCSGVVEDLD DARLRNKDVI
401: MEKPFENSSG GECGKTLDSP QVISVSRVSA AVAALYERSL LEEKIRAVRY AQPLTRYQRA AELGFMTAKA DEERNRRCSY RPIIDHDGRP RQRSLNQDMD
501: KMKTREELLA EERDYKRRRM SYRGKKVKRT PRQVLHDMIE EYTEEIKLAG GIGCFEKGMP LQSRSPIGND QKESDFGYSI PSTDKQWKGE NRADIEYPID
601: NRQNSDKVKR HDEYDSGSSQ RQQSHRSYKH SDRRDDKLRD RRKDKHNDRR DDEFTRTKRH SIEGESYQNY RSSREKSSSD YKTKRDDPYD RRSQQPRNQN
701: LFEDRYIPTE KE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)