AT3G04150.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RmlC-like cupins superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RmlC-like cupins superfamily protein; FUNCTIONS IN: manganese ion binding, nutrient reservoir activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, apoplast; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Cupin, RmlC-type (InterPro:IPR011051), Cupin 1 (InterPro:IPR006045), RmlC-like jelly roll fold (InterPro:IPR014710), Germin (InterPro:IPR001929); BEST Arabidopsis thaliana protein match is: RmlC-like cupins superfamily protein (TAIR:AT3G04170.1); Has 1459 Blast hits to 1457 proteins in 77 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 15; Plants - 1432; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:1089451..1090426 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 24650.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.37 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.31 | ||||||||||||||||||||||||||||||||||||
| Length | 229 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKGLVQFLVA KIILLVLAST FVHCYDPNPL QDYCVATNGT NRVFVNGKFC KDPKLVTAND FFYSGLNIPG NTSNRLGASV TDVDVRRIPG LNTLGIAIAR 101: LDFAPGGQLP PHIHPRASQI ILVLKGQLSV GFVSSNDYNY TLFSKILYPG DVFAFPIGLV QFHANTGKTH AVAIGVVGSQ DPGVIPIGDA VFGSNPLIDP 201: KLLAKAFALD VNIVRHVQRV FSSEGYIVK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)