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AT3G04130.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G22670.1); Has 33193 Blast hits to 12271 proteins in 280 species: Archae - 2; Bacteria - 32; Metazoa - 336; Fungi - 402; Plants - 31397; Viruses - 0; Other Eukaryotes - 1024 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Z7Z7eggNOG:KOG4197EMBL:AC016829EMBL:AY050872EMBL:CP002686EnsemblPlants:AT3G04130EnsemblPlants:AT3G04130.1
EnsemblPlants:AT3G04130.2entrez:819568Gene3D:1.25.40.10GeneID:819568Genevisible:Q9M8W9GO:GO:0005739Gramene:AT3G04130.1
Gramene:AT3G04130.2hmmpanther:PTHR24015hmmpanther:PTHR24015:SF347HOGENOM:HOG000239227InParanoid:Q9M8W9InterPro:IPR002885InterPro:IPR011990
KEGG:ath:AT3G04130OMA:EMPRNGVPaxDb:Q9M8W9Pfam:PF01535Pfam:PF12854Pfam:PF13041Pfam:PF13812
Pfam:Q9M8W9Pfscan:PS51375PhylomeDB:Q9M8W9PRIDE:Q9M8W9PRO:PR:Q9M8W9PROSITE:PS51375ProteinModelPortal:Q9M8W9
Proteomes:UP000006548RefSeq:NP_001030630.1RefSeq:NP_566222.1SMR:Q9M8W9STRING:3702.AT3G04130.1SUPFAM:SSF48452TAIR:AT3G04130
TIGRfam:TIGR00756TIGRFAMs:TIGR00756UniGene:At.26555UniProt:Q9M8W9
Coordinates (TAIR10) chr3:+:1084136..1085662
Molecular Weight (calculated) 58708.90 Da
IEP (calculated) 6.96
GRAVY (calculated) -0.36
Length 508 amino acids
Sequence (TAIR10)
(BLAST)
001: MSWLIQNRIG NTLLRLNPSS SSIAIFSTFI KNLSTASEQL PETLDEYSQS EEIWNVIVGR DGDRDSEDDV FKRLSSDEIC KRVNLSDGLV HKLLHRFRDD
101: WRSALGILKW AESCKGHKHS SDAYDMAVDI LGKAKKWDRM KEFVERMRGD KLVTLNTVAK IMRRFAGAGE WEEAVGIFDR LGEFGLEKNT ESMNLLLDTL
201: CKEKRVEQAR VVLLQLKSHI TPNAHTFNIF IHGWCKANRV EEALWTIQEM KGHGFRPCVI SYTTIIRCYC QQFEFIKVYE MLSEMEANGS PPNSITYTTI
301: MSSLNAQKEF EEALRVATRM KRSGCKPDSL FYNCLIHTLA RAGRLEEAER VFRVEMPELG VSINTSTYNS MIAMYCHHDE EDKAIELLKE MESSNLCNPD
401: VHTYQPLLRS CFKRGDVVEV GKLLKEMVTK HHLSLDESTY TFLIQRLCRA NMCEWAYCLF EEMISQDITP RHRTCLLLLE EVKKKNMHES AERIEHIMKT
501: VKLTAPVK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)