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AT3G04100.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AGAMOUS-like 57
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AGAMOUS-like 57 (AGL57); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: antipodal cell, embryo; CONTAINS InterPro DOMAIN/s: Transcription factor, MADS-box (InterPro:IPR002100); BEST Arabidopsis thaliana protein match is: AGAMOUS-like 59 (TAIR:AT1G28460.1); Has 5663 Blast hits to 5663 proteins in 656 species: Archae - 0; Bacteria - 0; Metazoa - 626; Fungi - 298; Plants - 4676; Viruses - 0; Other Eukaryotes - 63 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5068eggNOG:KOG0014EMBL:AC016829EMBL:CP002686EMBL:DQ056586EnsemblPlants:AT3G04100EnsemblPlants:AT3G04100.1
entrez:819565GeneID:819565GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351Gramene:AT3G04100.1
hmmpanther:PTHR11945hmmpanther:PTHR11945:SF173HOGENOM:HOG000238700IntAct:Q9M8W6InterPro:IPR002100KEGG:ath:AT3G04100ncoils:Coil
OMA:NELVAMCPfam:PF00319Pfscan:PS50066PhylomeDB:Q9M8W6PRINTS:PR00404PROSITE:PS50066Proteomes:UP000006548
RefSeq:NP_187060.1SMART:SM00432SMR:Q9M8W6STRING:3702.AT3G04100.1SUPFAM:SSF55455TAIR:AT3G04100tair10-symbols:AGL57
UniGene:At.53175UniProt:Q9M8W6
Coordinates (TAIR10) chr3:+:1075299..1075922
Molecular Weight (calculated) 24099.50 Da
IEP (calculated) 10.52
GRAVY (calculated) -0.86
Length 207 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTKQAKGR KTKGKQKIEM KKVENYGDRM ITFSKRKTGI FKKMNELVAM CDVEVAFLIF SQPKKPYTFA HPSMKKVADR LKNPSRQEPL ERDDTRPLVE
101: AYKKRRLHDL VKKMEALEEE LAMDLEKLKL LKESRNEKKL DKMWWNFPSE GLSAKELQQR YQAMLELRDN LCDNMAHLRL GKDCGGSSSV RVGRRVSGGV
201: RLFDREA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)