AT3G04010.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.997 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : O-Glycosyl hydrolases family 17 protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G18220.1); Has 2719 Blast hits to 2656 proteins in 173 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 96; Plants - 2598; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr3:-:1036879..1039263 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 54063.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 5.05 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.11 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 491 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MNYRRKQSAI TNSAVVFIII SAVCFLSGGV SGLGVNWGTM ASHQLPPKTV VEMLKDNNIQ KVKLFDADTN TMGALAGSGV EVMVAIPNDL LLAMGNYQRA 101: KDWVQRNVSR FNFNNGVKIK YVAVGNEPFL TAYNGSFINL TYPALFNIQT ALNEAGVGDF TKATVPLNAD VYNSPPDNQV PSAGRFRSDI IQEMTQIVNF 201: LAQNKAPFTV NIYPFLSLYL SSDFPFEYAF FDGQNTVNDN GVIYTNVFDA SFDTLLASLN ALNHGNMEVI VGEVGWPTDG DKNANVPNAE RFYSGLLPRL 301: ANNVGTPMRK GYIEVYLFGF IDEDAKSVAP GNFERHWGIF KFDGQPKFPV DFRGQGQKKF LTGAQNVQYF LNQWCMFNPN GRGNMSRLGD NINYACSHSD 401: CTALGYGSSC GNLDANGNAS YAFNMYFQVQ NQEAQACDFE GLATITTQNI SQGQCNFPIQ IGEPSSGHYD YSYGSMVRLC LVMSGLVFLL I |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)