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AT3G04010.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 0.939
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to membrane; EXPRESSED IN: 11 plant structures; EXPRESSED DURING: L mature pollen stage, LP.06 six leaves visible, M germinated pollen stage, LP.04 four leaves visible, 4 anthesis; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G18220.1); Has 2719 Blast hits to 2656 proteins in 173 species: Archae - 0; Bacteria - 8; Metazoa - 5; Fungi - 96; Plants - 2598; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G04010-MONOMERCAZy:CBM43CAZy:GH17eggNOG:ENOG410JVDGeggNOG:ENOG411060GEMBL:AC011698EMBL:BT029243
EMBL:CP002686EnsemblPlants:AT3G04010EnsemblPlants:AT3G04010.1entrez:819556Gene3D:3.20.20.80GeneID:819556GO:GO:0004553
GO:GO:0005975GO:GO:0031225Gramene:AT3G04010.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF55HOGENOM:HOG000238221InterPro:IPR000490
InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT3G04010OMA:NAERFYSPfam:PF00332Pfam:PF07983
PhylomeDB:Q9SQR1PROSITE:PS00587Proteomes:UP000006548RefSeq:NP_187051.3scanprosite:PS00587SMART:SM00768SMR:Q9SQR1
STRING:3702.AT3G04010.1SUPFAM:SSF51445TAIR:AT3G04010TMHMM:TMhelixUniGene:At.49382UniProt:Q9SQR1
Coordinates (TAIR10) chr3:-:1036879..1039263
Molecular Weight (calculated) 54063.00 Da
IEP (calculated) 5.05
GRAVY (calculated) -0.11
Length 491 amino acids
Sequence (TAIR10)
(BLAST)
001: MNYRRKQSAI TNSAVVFIII SAVCFLSGGV SGLGVNWGTM ASHQLPPKTV VEMLKDNNIQ KVKLFDADTN TMGALAGSGV EVMVAIPNDL LLAMGNYQRA
101: KDWVQRNVSR FNFNNGVKIK YVAVGNEPFL TAYNGSFINL TYPALFNIQT ALNEAGVGDF TKATVPLNAD VYNSPPDNQV PSAGRFRSDI IQEMTQIVNF
201: LAQNKAPFTV NIYPFLSLYL SSDFPFEYAF FDGQNTVNDN GVIYTNVFDA SFDTLLASLN ALNHGNMEVI VGEVGWPTDG DKNANVPNAE RFYSGLLPRL
301: ANNVGTPMRK GYIEVYLFGF IDEDAKSVAP GNFERHWGIF KFDGQPKFPV DFRGQGQKKF LTGAQNVQYF LNQWCMFNPN GRGNMSRLGD NINYACSHSD
401: CTALGYGSSC GNLDANGNAS YAFNMYFQVQ NQEAQACDFE GLATITTQNI SQGQCNFPIQ IGEPSSGHYD YSYGSMVRLC LVMSGLVFLL I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)