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AT3G04000.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: oxidoreductase activity, binding, catalytic activity; INVOLVED IN: oxidation reduction, metabolic process; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: NAD(P)-binding domain (InterPro:IPR016040), Glucose/ribitol dehydrogenase (InterPro:IPR002347), Short-chain dehydrogenase/reductase SDR (InterPro:IPR002198); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT3G03980.1); Has 120024 Blast hits to 119806 proteins in 3618 species: Archae - 979; Bacteria - 79335; Metazoa - 5674; Fungi - 6028; Plants - 2843; Viruses - 19; Other Eukaryotes - 25146 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G04000-MONOMERBioCyc:MetaCyc:AT3G04000-MONOMEReggNOG:COG1028eggNOG:KOG0725EMBL:AC011698EMBL:BT002321EMBL:CP002686
EnsemblPlants:AT3G04000EnsemblPlants:AT3G04000.1entrez:819555Gene3D:3.40.50.720GeneID:819555GO:GO:0008106GO:GO:0009507
GO:GO:0055114Gramene:AT3G04000.1hmmpanther:PTHR24322hmmpanther:PTHR24322:SF522InterPro:IPR002347InterPro:IPR016040KEGG:ath:AT3G04000
KO:K00059OMA:IRINSIGPANTHER:PTHR24322Pfam:PF00106PRINTS:PR00080PRINTS:PR00081PRO:PR:Q9SQR2
Proteomes:UP000006548Reactome:R-ATH-5661270RefSeq:NP_566221.2STRING:3702.AT3G04000.1SUPFAM:SSF51735TAIR:AT3G04000UniGene:At.18595
UniGene:At.67194UniProt:Q9SQR2
Coordinates (TAIR10) chr3:+:1035500..1036435
Molecular Weight (calculated) 28436.30 Da
IEP (calculated) 7.34
GRAVY (calculated) 0.22
Length 272 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAASSVSSP PLCLAGRVAI VTGSSRGIGR AIAIHLAELG ARVVVNYSTS PVEAEKVATA ITTNCSKDAE VAGKSPRVIV VKADISEPSQ VKSLFDEAER
101: VFESPVHILV NSAAIADPNH STISDMSVEL FDRIISVNTR GAFICAREAA NRLKRGGGGR IILLSTSLVQ TLNTNYGSYT ASKAAVEAMA KILAKELKGT
201: EITVNCVSPG PVATEMFYTG LSNEIVEKVK SQNLFGRIGE TKDIAPVVGF LASDAGEWIN GQVIMANGGC LL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)