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AT3G03890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FMN binding
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FMN binding; FUNCTIONS IN: FMN binding; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF2470 (InterPro:IPR019595), FMN-binding split barrel (InterPro:IPR012349), Pyridoxamine 5'-phosphate oxidase-like, FMN-binding domain (InterPro:IPR011576), FMN-binding split barrel, related (InterPro:IPR009002), Haem iron utilisation protein, pyridoxamine 5'-phosphate domain-containing (InterPro:IPR014599); BEST Arabidopsis thaliana protein match is: Pyridoxamine 5'-phosphate oxidase family protein (TAIR:AT3G21140.1); Has 807 Blast hits to 807 proteins in 287 species: Archae - 0; Bacteria - 489; Metazoa - 13; Fungi - 0; Plants - 155; Viruses - 0; Other Eukaryotes - 150 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0748eggNOG:ENOG410IFENEMBL:AK316665EMBL:AY085802EMBL:CP002686EnsemblPlants:AT3G03890EnsemblPlants:AT3G03890.1
entrez:821082ExpressionAtlas:Q8LDU1Gene3D:2.30.110.10Gene3D:3.20.180.10GeneID:821082GO:GO:0004733GO:GO:0009507
GO:GO:0010181Gramene:AT3G03890.1hmmpanther:PTHR13343hmmpanther:PTHR13343:SF4HOGENOM:HOG000265300InterPro:IPR011576InterPro:IPR012349
InterPro:IPR019595KEGG:00750+1.4.3.5KEGG:ath:AT3G03890OMA:MRIEPKVPfam:PF01243Pfam:PF10615PhylomeDB:Q8LDU1
Proteomes:UP000006548RefSeq:NP_566216.1SMR:Q8LDU1STRING:3702.AT3G03890.1SUPFAM:SSF50475TAIR:AT3G03890UniGene:At.24380
unipathway:UPA00190UniProt:Q8LDU1
Coordinates (TAIR10) chr3:-:999667..1001996
Molecular Weight (calculated) 35054.00 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.10
Length 321 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSLVAHFST PLITARLVPR CIIHRASISA VSFSTVRRRF SPLTMASAAQ SSSQAVSYGS GNSDTDVFKL IQAHEEKAAR LSPVEEIRTV LNGSICGMLS
101: TFSQKYEGYP SGSMVDFACD ADGSPILAVS SLAVHTKDLL ANPKCSLLIA RDPEDRTGLR ITLHGDAVLV SEKDQAAVRS AYLAKHPKAF WVDFGDFSFM
201: RIEPKVVRYV SGVATAFLGS GEFSKEEYQA AKVDPIAQYA KPVTSHMNKD HEEDTKAIVH NITSIPVESA LMLDLDSLGF NVKATLQGNT FKLRVPFPRR
301: AQDRKDVKTL IVEMLQAAKS N
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)