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AT3G03870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.616
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G18130.1); Has 41 Blast hits to 41 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 39; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXM9eggNOG:ENOG410YZPNEMBL:AY080808EMBL:CP002686EnsemblPlants:AT3G03870EnsemblPlants:AT3G03870.1entrez:821099
ExpressionAtlas:Q8RXM3GeneID:821099GO:GO:0016021Gramene:AT3G03870.1hmmpanther:PTHR33646hmmpanther:PTHR33646:SF2HOGENOM:HOG000091166
PhylomeDB:Q8RXM3Proteomes:UP000006548RefSeq:NP_850508.1STRING:3702.AT3G03870.2TAIR:AT3G03870TMHMM:TMhelixUniGene:At.43810
UniGene:At.74095UniProt:Q8RXM3
Coordinates (TAIR10) chr3:+:995520..996224
Molecular Weight (calculated) 25973.70 Da
IEP (calculated) 4.39
GRAVY (calculated) -0.51
Length 234 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLEDWELVL PKNSFKDLDL DHDEDHHGAM VMDYFLCPST KDPLPKTESP PRSKVVPKKI LQVPIAWEAV LDQDNTKIPN NPDLEPDPHP DPDSKPTLST
101: DSVSSPRVSF KIMKDTEFAD MKIDPPARIT SPLPQIDDAA SKPSDLEGGD DLRDKKEVVL EEEDEDGSGG ERLNLWKAGL NGIGAICSFG VAAAAATVCV
201: FFLGHNNIKI CKNKNQMLRF QIYSDDNKVM FLIS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)