suba logo
AT3G03840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
mitochondrion 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : SAUR-like auxin-responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SAUR-like auxin-responsive protein family ; CONTAINS InterPro DOMAIN/s: Auxin responsive SAUR protein (InterPro:IPR003676); BEST Arabidopsis thaliana protein match is: SAUR-like auxin-responsive protein family (TAIR:AT3G03820.1); Has 1137 Blast hits to 1129 proteins in 28 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1136; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
DNASU:821121EMBL:AC009540EMBL:AK117273EMBL:BT024648
EMBL:CP002686EnsemblPlants:AT3G03840EnsemblPlants:AT3G03840.1entrez:821121
GeneID:821121GO:GO:0009733Gramene:AT3G03840.1hmmpanther:PTHR31929
hmmpanther:PTHR31929:SF11HOGENOM:HOG000238628InterPro:IPR003676KEGG:ath:AT3G03840
KO:K14488OMA:REDKFIDPfam:PF02519PhylomeDB:Q9SRW1
Proteomes:UP000006548RefSeq:NP_187034.1STRING:3702.AT3G03840.1TAIR:AT3G03840
UniGene:At.40926UniProt:Q9SRW1
Coordinates (TAIR10) chr3:+:981258..981545
Molecular Weight (calculated) 10415.70 Da
IEP (calculated) 9.13
GRAVY (calculated) 0.03
Length 95 amino acids
Sequence (TAIR10)
(BLAST)
1: MALVRSLFVS NKILGGSLAG MRKSTSAPKG FLAVYVGESQ KKQRYLVLVS YLSQPLFQDL LSKSEEEFGF DHPMGGLTIP CPEDTFLTVT SRIQG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)