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AT3G03790.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.962
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ankyrin repeat family protein / regulator of chromosome condensation (RCC1) family protein; CONTAINS InterPro DOMAIN/s: Regulator of chromosome condensation/beta-lactamase-inhibitor protein II (InterPro:IPR009091), Regulator of chromosome condensation, RCC1 (InterPro:IPR000408), Ankyrin repeat-containing domain (InterPro:IPR020683), Ankyrin repeat (InterPro:IPR002110); BEST Arabidopsis thaliana protein match is: Regulator of chromosome condensation (RCC1) family protein (TAIR:AT5G63860.1); Has 47493 Blast hits to 19299 proteins in 916 species: Archae - 174; Bacteria - 5076; Metazoa - 23213; Fungi - 3118; Plants - 3847; Viruses - 203; Other Eukaryotes - 11862 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5184eggNOG:KOG1426EMBL:CP002686EnsemblPlants:AT3G03790EnsemblPlants:AT3G03790.1entrez:821145ExpressionAtlas:F4J2C6
Gene3D:1.25.40.20Gene3D:2.130.10.30GeneID:821145Gramene:AT3G03790.1hmmpanther:PTHR22870hmmpanther:PTHR22870:SF175InterPro:IPR000408
InterPro:IPR002110InterPro:IPR009091InterPro:IPR020683iPTMnet:F4J2C6PaxDb:F4J2C6Pfam:PF00415Pfam:PF12796
Pfscan:PS50012Pfscan:PS50088Pfscan:PS50297PRIDE:F4J2C6PRINTS:PR00633PROSITE:PS50012PROSITE:PS50088
PROSITE:PS50297ProteinModelPortal:F4J2C6Proteomes:UP000006548Reactome:R-ATH-3108214RefSeq:NP_187029.2SMART:SM00248SMR:F4J2C6
STRING:3702.AT3G03790.3SUPFAM:SSF48403SUPFAM:SSF50985TAIR:AT3G03790UniGene:At.43487UniProt:F4J2C6
Coordinates (TAIR10) chr3:+:963195..967857
Molecular Weight (calculated) 118293.00 Da
IEP (calculated) 9.66
GRAVY (calculated) -0.46
Length 1078 amino acids
Sequence (TAIR10)
(BLAST)
0001: MELSVSPQTQ KMNLQTPRKS SLSGSRKDLW FAIREGSLVD VDSALSILKK TGGNINLRNA YGLTPLHIAV WRNHIPIVRR LLAAGADPDA RDGESGWSSL
0101: HRALHFGHLA VASVLIDSGA SFTLEDIKLR TPVDLVSGPV AQVIGEQQSS EVFSWGNGAN YQLGTGNQHV QKVPGRVDSL HGCFIKLVSA AKFHSVAIST
0201: HGEVYTWGFG RGGRLGHPEF DIHSGQAAVI TPRQVISGLG SRRVKAVAAA KHHTVIATEG GDVYTWGSNR EGQLGYTSVD TQATPRKVTS LKAKIVAVSA
0301: ANKHTAVVSD CGEVFTWGCN KEGQLGYGTS NSASNYSPRL VDYLKGKVFT AIASSKYHTL VLRNDGEVYT WGHRLVTPRR VIISRNLKKA GNTLLNFHRR
0401: RPLRLTAIAA GMVHSLALAE DGAFFYWVSS DSNLRCQQLH SLHGKTVVSI SAGKYWASAV TSTGEVYMWD GKNGKDIAPS LSRLHNLKRA TTVAVGETHL
0501: LVVGSLYHPA YAPIVLKKSQ TLQADKCREE ENEELDEGFM FDDVESVNVL QSVQYDNPKE RIVPSLKSLC EKVAAECIVE PRNAIQLLEI ADSLGAEDLK
0601: KYCEDIVIRN LDFILTFSPQ SIANTSPDVL ANLEKLLDDR SSETWSSRPL PTPTATFPVV IDSEEEESES DILRTRDSHV KHFSSIGGTR MDSFLQPEDE
0701: LTQHNSKEVR ALRKKLQQIE ILEAKQSRGQ LLDGQQIAKL QKKLDIESSL VELGIPVEEF PEAKATTALP LEGKANKKGK KKKKGNQRFV QVETFPEFGE
0801: VKVEIDTMQD KEIEEICEAI KPKGGKTMLD TTMISGFPKE SDFVSLSQKK DNPPDSPRSK KLATAANKKK NRKGGLSMFL TGALDDVPKP VVAPPPRPKI
0901: EGPVWGGAKI SKGLSSLRDI QDEQSKTRSH EPVRTTKNQS GDDSPGKSEG KILLSSFLTS KPIPMEPAKS LQQSDVEKGT PPWASSETPR KLSRPSLRDI
1001: QMQEVKKQQS LSHSPKTKTS GFTVATGQGS PSDSPGTNRW FKPEIDAPSA IRSIQIEEKA MKDLRRFYSS VKVVRNQP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)