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AT3G03740.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.645
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : BTB-POZ and MATH domain 4
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BTB-POZ and MATH domain 4 (BPM4); CONTAINS InterPro DOMAIN/s: TRAF-like (InterPro:IPR008974), MATH (InterPro:IPR002083), BTB/POZ fold (InterPro:IPR011333), BTB/POZ (InterPro:IPR013069), Kelch related (InterPro:IPR013089), BTB/POZ-like (InterPro:IPR000210), TRAF-type (InterPro:IPR013322); BEST Arabidopsis thaliana protein match is: BTB-POZ and MATH domain 5 (TAIR:AT5G21010.1); Has 5789 Blast hits to 5682 proteins in 201 species: Archae - 0; Bacteria - 0; Metazoa - 3860; Fungi - 138; Plants - 1466; Viruses - 48; Other Eukaryotes - 277 (source: NCBI BLink).
Protein Annotations
BioGrid:6503eggNOG:ENOG410XQV8eggNOG:KOG1987EMBL:AC009540EMBL:AF367309EMBL:AY059150EMBL:AY084246
EMBL:CP002686EnsemblPlants:AT3G03740EnsemblPlants:AT3G03740.1entrez:821170Gene3D:2.60.210.10GeneID:821170Genevisible:Q9SRV1
GO:GO:0005829GO:GO:0006970GO:GO:0016567GO:GO:0042631GO:GO:0071472Gramene:AT3G03740.1hmmpanther:PTHR24411
hmmpanther:PTHR24411:SF35HOGENOM:HOG000220921InParanoid:Q9SRV1IntAct:Q9SRV1InterPro:IPR000210InterPro:IPR002083InterPro:IPR008974
InterPro:IPR011333KEGG:ath:AT3G03740KO:K10523MINT:MINT-7262955OMA:SLMCESVPaxDb:Q9SRV1Pfam:PF00651
Pfam:Q9SRV1Pfscan:PS50097Pfscan:PS50144PhylomeDB:Q9SRV1PRIDE:Q9SRV1PRO:PR:Q9SRV1PROSITE:PS50097
PROSITE:PS50144ProteinModelPortal:Q9SRV1Proteomes:UP000006548Reactome:R-ATH-5632684RefSeq:NP_566212.2SMART:SM00061SMART:SM00225
SMR:Q9SRV1STRING:3702.AT3G03740.1SUPFAM:SSF49599SUPFAM:SSF54695TAIR:AT3G03740tair10-symbols:ATBPM4tair10-symbols:BPM4
UniGene:At.24112UniPathway:UPA00143UniProt:Q9SRV1
Coordinates (TAIR10) chr3:-:937106..939807
Molecular Weight (calculated) 51000.70 Da
IEP (calculated) 4.98
GRAVY (calculated) -0.37
Length 465 amino acids
Sequence (TAIR10)
(BLAST)
001: MKSVIFTEEK NLQRQNPLQK SEQQRRNFEM PSPPTTTSLS VTQTINGSHS FTIKGYSLAK GIGIGKHIAS DTFTVGGYQW AIYFYPDGKN PEDNSAYVSV
101: FIALASDGTD VRALFELSLL DQSGKGKHKV HSHFDRALES GPYTLKYRGS MWGYKRFFRR LMLETSDFLK DDCLKINCTV GVVVSEIDCP RLHSIHVPAS
201: DIGSHFGMLL ENEDGSDITF NVSGEKFRAH RLVLAARSPV FESEFLDVTG EEDRDIEVTD MEPKVFKALL HYIYKDALIE DAESSSSSGS SVGPSASDTL
301: AAKLLGAADK YKLPRLSLMC ESVLCKDISV DSVANILALA DRYNASALKS VCLKFAAENL IAVMRSDGFD YLREHCPSLQ SELLKTVAGC EEELSGGGGK
401: TRSVWGQFSD GGAETNGRQA QTWGDINGGA ERSQSVWVEV VNANGSGRNN NDNNNSDDPM AELED
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)