AT3G03720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:vacuole 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : cationic amino acid transporter 4 | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a member of the cationic amino acid transporter (CAT) subfamily of amino acid polyamine choline transporters. | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
cationic amino acid transporter 4 (CAT4); FUNCTIONS IN: cationic amino acid transmembrane transporter activity; INVOLVED IN: transport, amino acid transport, transmembrane transport; LOCATED IN: plasma membrane, vacuole; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Cationic amino acid transporter (InterPro:IPR015606), Protein of unknown function DUF295 (InterPro:IPR005174), Amino acid/polyamine transporter I (InterPro:IPR002293), Amino acid permease domain (InterPro:IPR004841); BEST Arabidopsis thaliana protein match is: cationic amino acid transporter 2 (TAIR:AT1G58030.1); Has 38139 Blast hits to 35862 proteins in 2359 species: Archae - 591; Bacteria - 30521; Metazoa - 2149; Fungi - 2872; Plants - 748; Viruses - 0; Other Eukaryotes - 1258 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:925870..930974 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86379.40 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.47 | ||||||||||||||||||||||||||||||||
| Length | 801 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MCLRIGKAVL WVDEETRDYL VVWNYDGFFA YHKKGDDKNN WKVIQPLMNQ RCVDMVCKES KLYVLTDTHV TVLDFSHADA SPIQCASFKS PNYGNDSFCG 101: KNLAVTLSGQ VLIVIHSGGV YKMDPKSLEW SRTNSLGDEA FIFDLGITVA AKDGVMKNCI YFYADPPYRP RRRFVRNAES DGFALNRLEN QTGVDSAKLV 201: DMNSLVRRKQ VDSVHLIKND GPHQLAKKLS AVDLVAIGVG TTIGAGVYIL VGTVAREHTG PALAVSFFIA GVAAALSACC YAELASRCPS AGSAYHYAYI 301: CLGEGIAWLV GWALVLDYTI GGSAIARGIT PNLASFFGGL DNLPVFLARQ TIPGVGIVVD PCAALLIMIV TILLCFGIKE SSTVQAIVTS VNVCTLVFII 401: VVGGYLACKT GWVGYDLPSG YFPFGLNGIL AGSAVVFFSY IGFDTVTSTA EEVKNPQRDL PLGIGIALLI CCILYMLLSV VIVGLVPYYS LNPDTPISSA 501: FGDSGMQWAA YILTTGAITA LCASLLGSLL AQPRIFMAMA RDGLLPAFFS EISPRTQVPV KSTIAIGVLA AALAFFMDVA QLSEMVSVGT LMAFTAVAVC 601: VLVLRYVPPD GVPLSSSSQT LSDTDESRAE TENFLVDAIE SSDSPLLGNE TARDEKYFGK RRKIAAWSIA LVCIGVLGLA SAASAERLPS FPRFTICGVS 701: AVILLGSLIT LGYIDEDEER HNFGHKGGFL CPFVPYLPVL CILINTYLII NIGAGTWIRV LIWLLIGSMI YIFYGRSHSL LNNAVYVPTM TCTRKTTDHL 801: A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)