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AT3G03710.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : polyribonucleotide nucleotidyltransferase, putative
Curator
Summary (TAIR10)
Encodes a chloroplast polynucleotide phosphorylase (PNPase). Involved in response to phosphorus (P) starvation. Mutants impaired in the expression of this gene have been selected through their resistance to fosmidomycin, a strong inhibitor of DXR, an enzyme of the methylerythritol-dependent IPP biosynthesis pathway. The pathway enzymes were upregulated in the mutant seedlings.
Computational
Description (TAIR10)
resistant to inhibition with FSM 10 (RIF10); FUNCTIONS IN: polyribonucleotide nucleotidyltransferase activity, 3'-5'-exoribonuclease activity, RNA binding, nucleic acid binding; INVOLVED IN: chlorophyll biosynthetic process, cellular response to phosphate starvation, xanthophyll biosynthetic process, carotene biosynthetic process, negative regulation of isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: K Homology, type 1, subgroup (InterPro:IPR018111), Nucleic acid-binding, OB-fold (InterPro:IPR012340), Exoribonuclease, phosphorolytic domain 2 (InterPro:IPR015847), Ribosomal protein S1, RNA-binding domain (InterPro:IPR003029), Polynucleotide phosphorylase, phosphorolytic RNA-binding, bacterial/organelle-type (InterPro:IPR015848), K Homology (InterPro:IPR004087), Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), K Homology, type 1 (InterPro:IPR004088), Exoribonuclease, phosphorolytic domain 1 (InterPro:IPR001247), Ribosomal protein S5 domain 2-type fold (InterPro:IPR020568), Polyribonucleotide nucleotidyltransferase (InterPro:IPR012162); BEST Arabidopsis thaliana protein match is: polyribonucleotide nucleotidyltransferase, putative (TAIR:AT5G14580.1); Has 29137 Blast hits to 25785 proteins in 2865 species: Archae - 377; Bacteria - 19207; Metazoa - 333; Fungi - 67; Plants - 272; Viruses - 0; Other Eukaryotes - 8881 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G03710-MONOMEREC:2.7.7.8eggNOG:COG1185eggNOG:KOG1067EMBL:AC009327EMBL:AC009540EMBL:AF450480
EMBL:AJ252123EMBL:CP002686EnsemblPlants:AT3G03710EnsemblPlants:AT3G03710.1entrez:821181Gene3D:1.10.10.400Gene3D:2.40.50.140
Gene3D:3.30.1370.10Gene3D:3.30.230.70GeneID:821181Genevisible:Q8GZQ3GO:GO:0000175GO:GO:0003723GO:GO:0004654
GO:GO:0006364GO:GO:0006397GO:GO:0006401GO:GO:0006402GO:GO:0008033GO:GO:0009507GO:GO:0009570
GO:GO:0010323GO:GO:0015995GO:GO:0016036GO:GO:0016120GO:GO:0016123GO:GO:0031425GO:GO:0090503
Gramene:AT3G03710.1HAMAP:MF_01595hmmpanther:PTHR11252hmmpanther:PTHR11252:SF0HOGENOM:HOG000218327InParanoid:Q8GZQ3InterPro:IPR001247
InterPro:IPR003029InterPro:IPR004087InterPro:IPR004088InterPro:IPR012162InterPro:IPR012340InterPro:IPR015847InterPro:IPR015848
InterPro:IPR020568InterPro:IPR022967InterPro:IPR027408iPTMnet:Q8GZQ3KEGG:00230+2.7.7.8KEGG:00240+2.7.7.8KEGG:ath:AT3G03710
KO:K00962OMA:PYAPLIHPANTHER:PTHR11252PaxDb:Q8GZQ3Pfam:PF00013Pfam:PF00575Pfam:PF01138
Pfam:PF03725Pfam:Q8GZQ3Pfscan:PS50084Pfscan:PS50126PhylomeDB:Q8GZQ3PRIDE:Q8GZQ3PRO:PR:Q8GZQ3
PROSITE:PS50084PROSITE:PS50126ProteinModelPortal:Q8GZQ3Proteomes:UP000006548RefSeq:NP_187021.2SMART:SM00316SMART:SM00322
SMR:Q8GZQ3STRING:3702.AT3G03710.1SUPFAM:SSF46915SUPFAM:SSF50249SUPFAM:SSF54211SUPFAM:SSF54791SUPFAM:SSF55666
TAIR:AT3G03710tair10-symbols:PNPtair10-symbols:RIF10TIGRfam:TIGR03591TIGRFAMs:TIGR03591UniGene:At.26536UniProt:Q8GZQ3
Coordinates (TAIR10) chr3:+:919542..924906
Molecular Weight (calculated) 99572.10 Da
IEP (calculated) 5.23
GRAVY (calculated) -0.22
Length 922 amino acids
Sequence (TAIR10)
(BLAST)
001: MLTSPSNALH SSTPQFWPLR RSKLCRSRNF PRFHSGERSS GGGGKLCSLS LLSGSGAGKF SVRALVRPDD TDDADSVGDG SLAFPNHVSV KIPFGNREIL
101: VETGLMGRQA SSAVTVTDGE TIVYTSVCLA DVPSEPSDFL PLYVHYQERF SAVGRTSGGF FKREGRTKDH EVLICRLIDR PLRPTMPKGF YNETQILSWV
201: LSYDGLHAPD ALAVTSAGIA VALSEVPNAK AIAGVRVGLI GGEFIVNPTV KEMEESQLDL FLAGTDTAIL TIEGYSNFLP EEMLLQAVKV GQDAVQATCI
301: AIEVLAKKYG KPKMLDAIRL PPPELYKHVK ELAGEELTKA LQIKSKISRR KAISSLEEKV LTILTEKGYV IDEVAFGTIE AQPDLLEDED EDEEVVPEGE
401: VDQGDVHIRP IPRKPIPLLF SEVDVKLVFK EVSSKLLRRR IVEGGKRSDG RTLDEIRPIN SRCGLLPRAH GSTLFTRGET QALAVVTLGD KQMAQRIDNL
501: EGSDEYKRFY LQYTFPPSSV GEVGRIGAPS RREIGHGTLA ERALETILPS DDDFPYTIRV ESTVIESNGS SSMASVCGGC LALQDAGVPV KCSVAGIAMG
601: MVWDTEEFGG DGSPLILSDI TGAEDASGDM DFKVAGNEDG VTAFQMDIKV GGITLEIMEK ALIQAKAGRR HILAEMAKCS PPPTLSLSKY APLILIMKVH
701: PSKVYSLIGS GGKKVKSIIE ESGVEAIDMQ DDGTVKIMAI DVASLERAKA IISGLTMVPS VGDIYRNCEI KSMAPYGAFV EIAPGREGLC HISELSAEWL
801: AKPEDAYKVG DRIDVKLIEV NEKGQLRLSV RALLPESETD KDSQKQQPAG DSTKDKSSQR KYVNTSSKDR AAAGASKVSS GDELVLKKKD VRRATGGSSD
901: KTMNSNSSTN EESLVNGEAT IS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)