AT3G03560.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G23490.1); Has 157 Blast hits to 146 proteins in 38 species: Archae - 3; Bacteria - 14; Metazoa - 8; Fungi - 0; Plants - 120; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:853153..856486 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 59125.50 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 4.85 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||
| Length | 521 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDDNRSSESI KRHEIEKDTI ASRKLEDTNT KLIQDPEEMA LYAKVRSQEE EIHSLQERIA AACLKDMQLL NEKYGLERKC ADLRVAIDEK QNESVTSALN 101: ELARRKGDLE ENLKLAHDLK VTEDERYIFM TSLLGLLAEY GVWPRVANAT AISSGIKHLH DQLQWKTKAC NDRIRELSSI VENQPGTDFI SKDNHDPRNS 201: KTQASYGSTD RGNDYQTNEQ LLPPMENVTR NPYHNIMQDT ESLRFNNQIG GGSQGIFPQP KRENFGYPLS SVAGKEMIQE REEKAENSSM FDAYNGNEEF 301: ASHVYEEGPG IDGFQIIGDA IPGEKVLGCG FPVRGTTLCM FQWVRHLEDG TRQYIEGATH PEYIVTADDV DKLIAVECIP MDDQGRQGEL VRLFANDQNK 401: IRCDTEMQTE IDTYISRGQA SFNVQLLMDS SESWEPATVV LKRSSYQIKT NTTEAVVISE KYSKELQIRV PSGESTQFVL ISYDGSSHPI STLNVRMRDT 501: LVLTMRMLQS KALDERRKGR V |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)