AT3G03440.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ARM repeat superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ARM repeat superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-like helical (InterPro:IPR011989), Armadillo (InterPro:IPR000225), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: ARM repeat superfamily protein (TAIR:AT4G12710.1); Has 4476 Blast hits to 2974 proteins in 239 species: Archae - 0; Bacteria - 8; Metazoa - 931; Fungi - 611; Plants - 2534; Viruses - 0; Other Eukaryotes - 392 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:815709..818568 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 43681.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.04 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.07 | ||||||||||||||||||||||||||||||||
| Length | 408 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDLAGETNSL ISTVASSSSC SSSVSSIDTS LDCDSPRGGD VDHELLHTAV SVSSSVSVSS SSSASIQRVL SLIRSEDCDS RLFAAKEIRR LTKTSHRCRR 101: HFSQAVEPLV SMLRFDSPES HHEAALLALL NLAVKDEKNK VSIIEAGALE PIINFLQSNS PTLQEYASAS LLTLSASANN KPIIGANGVV PLLVKVIKHG 201: SPQAKADAVM ALSNLSTLPD NLSMILATKP LSPILNLLKS SKKSSKTSEK CCSLIEALMV SGEEARTGLV SDEGGVLAVV EVLENGSLQA REHAVGVLLT 301: LCQSDRSKYR EPILREGVIP GLLELTVQGT SKSRIKAQRL LCLLRNSESP RSEVQPDTIE NIVSSLISHI DGDDQSGKAK KMLAEMVQVS MEKSLRHLQE 401: RASTLVRP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)