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AT3G03360.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.998
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364); BEST Arabidopsis thaliana protein match is: RNI-like superfamily protein (TAIR:AT3G18150.1); Has 2219 Blast hits to 2186 proteins in 33 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 6; Plants - 2203; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioGrid:6605eggNOG:ENOG410JHFZeggNOG:ENOG410ZQIVEMBL:AC009895EMBL:AK229563EMBL:AK229911EMBL:AK318807
EMBL:BT004131EMBL:CP002686EnsemblPlants:AT3G03360EnsemblPlants:AT3G03360.1entrez:821272Gene3D:3.80.10.10GeneID:821272
Genevisible:Q84W80hmmpanther:PTHR32153hmmpanther:PTHR32153:SF2HOGENOM:HOG000097837InParanoid:Q84W80InterPro:IPR001810InterPro:IPR013101
InterPro:IPR032675iPTMnet:Q84W80KEGG:ath:AT3G03360OMA:ADIDSWIPaxDb:Q84W80Pfam:PF00646Pfam:PF07723
Pfam:PF12937Pfam:Q84W80Pfscan:PS50181PhylomeDB:Q84W80PRIDE:Q84W80PRO:PR:Q84W80PROSITE:PS50181
ProteinModelPortal:Q84W80Proteomes:UP000006548RefSeq:NP_186986.1SMART:SM00256SMR:Q84W80SUPFAM:SSF52047SUPFAM:SSF81383
TAIR:AT3G03360UniGene:At.48615UniGene:At.74916UniProt:Q84W80
Coordinates (TAIR10) chr3:+:795218..796918
Molecular Weight (calculated) 54951.00 Da
IEP (calculated) 9.05
GRAVY (calculated) -0.13
Length 481 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKESQENST RPDASSTVFS SSKSTCASPS YLKEAGDLIS RLPDDILQLI LSYLPTRLAI KTSVLSRRWR HVWSDTWSLS FHRDRPDAPC INRILDRYRA
101: PKMMSFRICS CCRAACISRP DTHADIDSWI NFAMSRNVEN LSLYLDEDKY DIPEFLYINS SLKQLYLDFG CKKDFISLNP KCSVSWTSLK NLSLYHCNIS
201: DESIAIILSG CPILESLLLF FCKKLKVLDL SKSPRLITLE ITRRCRMEPT QLVAPHIRCL RLINSEKPCA LVDVSSLSQA ELDITAYAIV DNKLEADFHQ
301: TMVVKMLEKC QNVEKLTLGA NFLKMLSLAE LRGVSFPKLK AKALILETMI SRYVIHGIVK VLQNSPDLKK LTIHPMGSAG SYPIPEEHID IYLDSHGLNW
401: DPSWSSEFKN TSRRNVESKQ VASFLQLVLK TISTLELIVA RLEGYIKGRR FVELRQMVPM LPRNNDVSIV LSSRRKRFRV T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)