AT3G03340.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : LUC7 related protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unfertilized embryo sac 6 (UNE6); CONTAINS InterPro DOMAIN/s: LUC7 related (InterPro:IPR004882); BEST Arabidopsis thaliana protein match is: LUC7 related protein (TAIR:AT5G17440.1); Has 25128 Blast hits to 10547 proteins in 429 species: Archae - 23; Bacteria - 333; Metazoa - 14905; Fungi - 3154; Plants - 2060; Viruses - 86; Other Eukaryotes - 4567 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:786439..789762 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47358.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.89 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.21 | ||||||||||||||||||||||||||||||||||||
| Length | 402 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MDAIRKQLDV LMGANRNGDV QEVNRKYYDR DVCRLYLSGL CPHDLFQLTK MDMGPCPKVH SLQLRKEYRE ARAKGVDNYD RELEDAIDRL IVECDRKIGR 101: ALKRLQEEDA KAAIAISVSE VTQSPEILEL SEKIKEKMKE ADIHDLEGKM DLKIRALELV EEMRTKRADQ QAVLLLEAFN KDRASLPQPV PAQPPSSELP 201: PPDPRTQEMI NEKLKKAEDL GEQGMVDEAQ KALEEAEALK KLTVRREPPA DSTKYTAVDV RITDQKLRLC DICGAFLSVY DSDRRLADHF GGKLHLGYML 301: VRDKLTELLD EKANIRKERS KERNSKERES SKDREKEQET SREHRRDYDR RSRDRDRHHD RDREQDRDYD RSHSRSRRRS RSRSRSRDRP RDYDRHRRHN 401: RY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)