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AT3G03160.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
endoplasmic reticulum 0.620
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: intracellular protein transport; LOCATED IN: endomembrane system, integral to membrane, endoplasmic reticulum; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: B-cell receptor-associated 31-like (InterPro:IPR008417); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G17190.1); Has 102 Blast hits to 102 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IXA4eggNOG:ENOG4111X7FEMBL:AC012328EMBL:AY065392
EMBL:AY088843EMBL:AY096722EMBL:CP002686EnsemblPlants:AT3G03160
EnsemblPlants:AT3G03160.1entrez:821066GeneID:821066GO:GO:0005783
GO:GO:0006886GO:GO:0016021Gramene:AT3G03160.1hmmpanther:PTHR12701
hmmpanther:PTHR12701:SF12HOGENOM:HOG000239460InterPro:IPR008417KEGG:ath:AT3G03160
ncoils:CoilOMA:HLNQRIEPANTHER:PTHR12701PhylomeDB:Q9M9N5
Proteomes:UP000006548RefSeq:NP_566195.1STRING:3702.AT3G03160.1TAIR:AT3G03160
TMHMM:TMhelixUniGene:At.22662UniGene:At.28503UniProt:Q9M9N5
Coordinates (TAIR10) chr3:+:729876..730268
Molecular Weight (calculated) 14843.60 Da
IEP (calculated) 8.83
GRAVY (calculated) 0.35
Length 130 amino acids
Sequence (TAIR10)
(BLAST)
001: MALEWVVLGY AAAAEAIMVV LLTMPGLDGL RKGLVAVTRN LLKPFLSIVP FCLFLLMDIY WKYETMPSCD GDSCTPSEHL RHQKSMMKSQ RNALLIAAAL
101: VFYWILYSVT NLVVKIEHLN QRIERLRNKD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)