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AT3G03110.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30961429 (2019): nucleus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:19334764 (2009): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : exportin 1B
Curator
Summary (TAIR10)
Encodes a member of the exportin family (XPO1B)which function as receptors for nuclear transport.Along with XPO1A involved in the development of male and female gametophytes.
Computational
Description (TAIR10)
exportin 1B (XPO1B); FUNCTIONS IN: protein transporter activity, binding; INVOLVED IN: pollen germination, protein import into nucleus, docking, pollen tube growth, embryo sac development, pollen development; LOCATED IN: nucleus, nuclear pore, cytoplasm; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Importin-beta, N-terminal (InterPro:IPR001494), Exportin 1, C-terminal (InterPro:IPR014877), Exportin-1/Importin-beta-like (InterPro:IPR013598), Armadillo-like helical (InterPro:IPR011989), Armadillo-type fold (InterPro:IPR016024); BEST Arabidopsis thaliana protein match is: exportin 1A (TAIR:AT5G17020.1); Has 1366 Blast hits to 1341 proteins in 221 species: Archae - 0; Bacteria - 0; Metazoa - 780; Fungi - 258; Plants - 127; Viruses - 0; Other Eukaryotes - 201 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5101eggNOG:KOG2020EMBL:AC012328EMBL:AF367278
EMBL:AJ277542EMBL:AK226898EMBL:BT004508EMBL:CP002686
EnsemblPlants:AT3G03110EnsemblPlants:AT3G03110.1entrez:821074Gene3D:1.25.10.10
GeneID:821074Genevisible:F4IZR5GO:GO:0005643GO:GO:0006886
GO:GO:0009506GO:GO:0009553GO:GO:0009555GO:GO:0009846
GO:GO:0009860GO:GO:0031965GO:GO:0051028Gramene:AT3G03110.1
hmmpanther:PTHR11223HOGENOM:HOG000209012InParanoid:F4IZR5InterPro:IPR001494
InterPro:IPR011989InterPro:IPR013598InterPro:IPR014877InterPro:IPR016024
KEGG:ath:AT3G03110KO:K14290OMA:AHVQEYIPaxDb:F4IZR5
Pfam:F4IZR5Pfam:PF03810Pfam:PF08389Pfam:PF08767
Pfscan:PS50166PRIDE:F4IZR5PRO:PR:F4IZR5ProMEX:F4IZR5
PROSITE:PS50166ProteinModelPortal:F4IZR5Proteomes:UP000006548RefSeq:NP_566193.2
SMART:SM00913SMART:SM01102SMR:F4IZR5STRING:3702.AT3G03110.1
SUPFAM:SSF48371TAIR:AT3G03110tair10-symbols:CRM1Btair10-symbols:XPO1B
UniGene:At.10434UniProt:F4IZR5
Coordinates (TAIR10) chr3:+:708966..716879
Molecular Weight (calculated) 123200.00 Da
IEP (calculated) 5.59
GRAVY (calculated) -0.04
Length 1076 amino acids
Sequence (TAIR10)
(BLAST)
0001: MAAEKLRDLS QPIDVVLLDA TVEAFYSTGS KEERASADNI LRDLKANPDT WLQVVHILQN TSSTHTKFFA LQVLEGVIKY RWNALPVEQR DGMKNYISDV
0101: IVQLSRDEAS FRTERLYVNK LNIILVQIVK QEWPAKWKSF IPDLVIAAKT SETICENCMA ILKLLSEEVF DFSKGEMTQQ KIKELKQSLN SEFQLIHELC
0201: LYVLSASQRQ ELIRATLSAL HAYLSWIPLG YIFESPLLEI LLKFFPVPAY RNLTLQCLSE VASLNFGDFY DMQYVKMYSI FMNQLQAILP LNLNIPEAYS
0301: TGSSEEQAFI QNLALFFTSF FKLHIKILES APENISLLLA GLGYLISISY VDDTEVFKVC LDYWNSLVLE LFGTRHHACH PALTPSLFGL QMAFLPSTVD
0401: GVKSEVTERQ KLYSDPMSKL RGLMISRTAK PEEVLIVEDE NGNIVRETMK DNDVLVQYKI MRETLIYLSH LDHEDTEKQM LSKLSKQLSG EEWAWNNLNT
0501: LCWAIGSISG SMVVEQENRF LVMVIRDLLS LCEVVKGKDN KAVIASNIMY VVGQYSRFLR AHWKFLKTVV HKLFEFMHET HPGVQDMACD TFLKIVQKCK
0601: RKFVIVQVGE SEPFVSELLS GLATIVGDLQ PHQIHTFYES VGSMIQAESD PQKRGEYLQR LMALPNQKWA EIIGQARQSA DILKEPDVIR TVLNILQTNT
0701: RVATSLGTFF LSQISLIFLD MLNVYRMYSE LVSSSIANGG PYASRTSLVK LLRSVKREIL KLIETFLDKA ENQPHIGKQF VPPMMDQVLG DYARNVPDAR
0801: ESEVLSLFAT IINKYKVVMR DEVPLIFEAV FQCTLEMITK NFEDYPEHRL KFFSLLRAIA TFCFRALIQL SSEQLKLVMD SVIWAFRHTE RNIAETGLNL
0901: LLEMLKNFQK SDFCNKFYQT YFLQIEQEVF AVLTDTFHKP GFKLHVLVLQ HLFSLVESGS LAEPLWDAAT VPHPYSNNVA FVLEYTTKLL SSSFPNMTTT
1001: EVTQFVNGLY ESRNDVGRFK DNIRDFLIQS KEFSAQDNKD LYAEEAAAQM ERERQRMLSI PGLIAPSEIQ DDMADS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)