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AT3G02950.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.996
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Tho complex subunit 7/Mft1p
Curator
Summary (TAIR10)
Encodes a component of the putative Arabidopsis THO/TREX complex: THO1 or HPR1 (At5g09860), THO2 (At1g24706), THO3 or TEX1 (At5g56130), THO5 (At5g42920, At1g45233), THO6 (At2g19430), and THO7 (At5g16790, At3g02950). THO/TREX complexes in animals have been implicated in the transport of mRNA precursors. Mutants of THO3/TEX1, THO1, THO6 accumulate reduced amount of small interfering (si)RNA, suggesting a role of the putative Arabidopsis THO/TREX in siRNA biosynthesis.
Computational
Description (TAIR10)
THO7; CONTAINS InterPro DOMAIN/s: Tho complex subunit 7 (InterPro:IPR018018), Tho complex subunit 7/Mft1p (InterPro:IPR008501); BEST Arabidopsis thaliana protein match is: Tho complex subunit 7/Mft1p (TAIR:AT5G16790.1); Has 2509 Blast hits to 2230 proteins in 391 species: Archae - 54; Bacteria - 255; Metazoa - 1226; Fungi - 237; Plants - 121; Viruses - 25; Other Eukaryotes - 591 (source: NCBI BLink).
Protein Annotations
BioGrid:6507eggNOG:ENOG4111K36eggNOG:KOG3215EMBL:AC018363EMBL:AF424596EMBL:BT014879EMBL:CP002686
EnsemblPlants:AT3G02950EnsemblPlants:AT3G02950.1entrez:821174GeneID:821174Genevisible:Q9M8T6GO:GO:0000347GO:GO:0000445
GO:GO:0003723GO:GO:0006397GO:GO:0008380GO:GO:0051028Gramene:AT3G02950.1hmmpanther:PTHR23405HOGENOM:HOG000242591
InParanoid:Q9M8T6InterPro:IPR008501KEGG:ath:AT3G02950KO:K13176ncoils:CoilOMA:NTMEDEQPaxDb:Q9M8T6
Pfam:PF05615Pfam:Q9M8T6PhylomeDB:Q9M8T6PRIDE:Q9M8T6PRO:PR:Q9M8T6ProteinModelPortal:Q9M8T6Proteomes:UP000006548
RefSeq:NP_566189.1STRING:3702.AT3G02950.1TAIR:AT3G02950tair10-symbols:AtTHO7tair10-symbols:THO7UniGene:At.26301UniProt:Q9M8T6
Coordinates (TAIR10) chr3:-:665631..666439
Molecular Weight (calculated) 27462.60 Da
IEP (calculated) 4.82
GRAVY (calculated) -0.77
Length 236 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVKARRISG RLETVVTKVN YAFDPVDDDK IIRNRLLTRT TTTRGEPPLK KLQKKFTSFV LEVDKEEENY NDCGRLAKAF LQELSTFEIP LLKSQAVVEA
101: NLREKESFNE VKDETERQIM QAKAEIEDLK KQLEESKIDR QHKEECETIR KLISAQPPRS ETEKVIYELN KEIAELEAES TASWRLLELR KKQFALLMHV
201: VDELQNTMED EQKSLVDEIR SASEDQRNIT DAMSVD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)