AT3G02890.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RING/FYVE/PHD zinc finger superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT5G16680.1); Has 3422 Blast hits to 2706 proteins in 325 species: Archae - 2; Bacteria - 367; Metazoa - 1746; Fungi - 295; Plants - 487; Viruses - 5; Other Eukaryotes - 520 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:640828..645303 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 108871.00 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.27 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.84 | ||||||||||||||||||||||||||||||||
| Length | 994 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MADRRVGNRP MGRRGRLEIQ SGTCNVCSAP CSSCMHHNAE FSGSKSDESS DENSHGVLAS QCSFNGDNLL RSSGVNAPGS SHNTSSEASH LVNSNHDTSS 101: ENAESKEIIR SSDISHGPLL DRPHKDQDSM KVDSCNDHQA RSTLGQGKVK EKSGAKNNEE KKNTLTGSSK HSGPRVGKSG ENVLLNKADE SNTSAMSDSE 201: SENDPEMLEL DVKVCDTCGD AGREDLLAIC SRCSDGAEHT YCMRVMLKKV PKGYWLCEEC KFAEKAEKHK LETKRKRESE VNVNTQISSK RHIDKFEAVP 301: DSKRLAVGAQ IGSPKRSVLP RMSTLSRETS FKGLEKPTRK LAHYSSFNSH SSDDTESTRS TDSQLQSPKG SFLKSNSFNS LSSRSKVRPV DDDMLPRQKT 401: GNENSSLEVK EGFSKNVGKS MSSRCIDVGS SNCNDSKVKG SKQLKDWSTE ANPSASISRG NSSIPYAKSP RDLKDLQSDG KQGSLSKQAR HLSRNRLEDI 501: VASVGDSSKN EKCSSSEQIS SEAKCKDELA QVDGVPRSRE FREAGEKTKD AVGNHQKRNI GEDNNKGNRL RAAVDAALRK KPSFSKNRGL EQSDLPPVSN 601: VDSGCNKALK CLSSKVPVIR DWPVGFQGLP GGHPNLRTDK QTNTVNEKQF TLAGTDATTA SQSVEPEVND PSVQSVMRDL PVAAPNVLST TSAIPKPEYI 701: WQGDLEVQKS RNLSAMHSGI QAYLSTLASP KVVEVVKQFP EKVTLNEVPR LSSWPAQFQD TGAKEQHVAL FFFAKDIESY EKNYKPLVDN MIQKDLALKG 801: NLEGVELLIF ASNQLPQDCQ RWNMLFFLWG VFRGKKESCS NPPKNTPLPA SCVSPNRDTF RHENPSNKKS LTDRTLSRMQ SCMKEEDAKE GKACSGTEKE 901: NAFSVSYGEG EVDVETEEGE IGVSPQLKYE KTAGPGTVKS ADMNQRVNVD DLNKEGLCEG PANKKLKTVT GVETGCSIVR RDTSVHKFAS RKFV |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)