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AT3G02885.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : GAST1 protein homolog 5
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
GAST1 protein homolog 5 (GASA5); INVOLVED IN: response to gibberellin stimulus; LOCATED IN: endomembrane system; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Gibberellin regulated protein (InterPro:IPR003854); BEST Arabidopsis thaliana protein match is: Gibberellin-regulated family protein (TAIR:AT1G74670.1); Has 468 Blast hits to 468 proteins in 44 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 468; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6527eggNOG:ENOG410J08AeggNOG:ENOG41116UKEMBL:AC018363EMBL:BT002786EMBL:BT004355EMBL:CP002686
EnsemblPlants:AT3G02885EnsemblPlants:AT3G02885.1entrez:821194GeneID:821194Genevisible:Q84J95GO:GO:0005578GO:GO:0005618
GO:GO:0009408GO:GO:0009506GO:GO:0009740GO:GO:0009751GO:GO:0010286Gramene:AT3G02885.1hmmpanther:PTHR23201
hmmpanther:PTHR23201:SF1InParanoid:Q84J95IntAct:Q84J95InterPro:IPR003854KEGG:ath:AT3G02885OMA:MANCIRRPaxDb:Q84J95
Pfam:PF02704Pfam:Q84J95PhylomeDB:Q84J95PRO:PR:Q84J95ProteinModelPortal:Q84J95Proteomes:UP000006548RefSeq:NP_566186.1
STRING:3702.AT3G02885.1TAIR:AT3G02885tair10-symbols:GASA5TMHMM:TMhelixUniGene:At.5431UniProt:Q84J95
Coordinates (TAIR10) chr3:-:638323..639011
Molecular Weight (calculated) 10845.60 Da
IEP (calculated) 10.07
GRAVY (calculated) -0.19
Length 97 amino acids
Sequence (TAIR10)
(BLAST)
1: MANCIRRNAL FFLTLLFLLS VSNLVQAARG GGKLKPQQCN SKCSFRCSAT SHKKPCMFFC LKCCKKCLCV PPGTFGNKQT CPCYNNWKTK EGRPKCP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)