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AT3G02870.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:17644812 (2007): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Inositol monophosphatase family protein
Curator
Summary (TAIR10)
Encodes a L-galactose-1-phosphate phosphatase, involved in ascorbate biosynthesis.
Computational
Description (TAIR10)
VTC4; FUNCTIONS IN: 3'(2'),5'-bisphosphate nucleotidase activity, L-galactose-1-phosphate phosphatase activity, inositol or phosphatidylinositol phosphatase activity, inositol-1(or 4)-monophosphatase activity; INVOLVED IN: sulfur metabolic process, L-ascorbic acid biosynthetic process, response to karrikin, response to cold, inositol biosynthetic process; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol monophosphatase, conserved site (InterPro:IPR020550), Inositol monophosphatase (InterPro:IPR000760), Inositol monophosphatase, metal-binding site (InterPro:IPR020583), Inositol monophosphatase, Lithium-sensitive (InterPro:IPR020552); BEST Arabidopsis thaliana protein match is: myo-inositol monophosphatase like 1 (TAIR:AT1G31190.1); Has 16249 Blast hits to 16237 proteins in 2366 species: Archae - 250; Bacteria - 8645; Metazoa - 648; Fungi - 322; Plants - 290; Viruses - 0; Other Eukaryotes - 6094 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-94-MONOMERBioCyc:ARA:GQT-95-MONOMERBioCyc:MetaCyc:AT3G02870-MONOMERBRENDA:3.1.3.25BRENDA:3.1.3.93BRENDA:3.1.3.B9EC:3.1.3.25
EC:3.1.3.93eggNOG:COG0483eggNOG:KOG2951EMBL:AC018363EMBL:AY035150EMBL:AY063021EMBL:AY085548
EMBL:CP002686EnsemblPlants:AT3G02870EnsemblPlants:AT3G02870.1entrez:821206ExpressionAtlas:Q9M8S8GeneID:821206Genevisible:Q9M8S8
GO:GO:0000287GO:GO:0005829GO:GO:0005886GO:GO:0006021GO:GO:0007165GO:GO:0008934GO:GO:0009409
GO:GO:0010347GO:GO:0019853GO:GO:0046854GO:GO:0046855GO:GO:0052832GO:GO:0052833GO:GO:0080167
gramene_pathway:3.1.3.-gramene_pathway:3.1.3.25gramene_pathway:PWY-2301gramene_pathway:PWY-4702gramene_pathway:PWY-882hmmpanther:PTHR20854hmmpanther:PTHR20854:SF4
HOGENOM:HOG000282238InParanoid:Q9M8S8InterPro:IPR000760InterPro:IPR020550InterPro:IPR020552InterPro:IPR020583iPTMnet:Q9M8S8
KEGG:00521+3.1.3.25KEGG:00562+3.1.3.25KEGG:04070+3.1.3.25OMA:KIEFGIVPANTHER:PTHR20854PaxDb:Q9M8S8Pfam:PF00459
Pfam:Q9M8S8PhylomeDB:Q9M8S8PRIDE:Q9M8S8PRINTS:PR00377PRINTS:PR00378PRO:PR:Q9M8S8PROSITE:PS00629
PROSITE:PS00630ProteinModelPortal:Q9M8S8Proteomes:UP000006548Reactome:R-ATH-1855183RefSeq:NP_186936.1SABIO-RK:Q9M8S8scanprosite:PS00629
scanprosite:PS00630SMR:Q9M8S8STRING:3702.AT3G02870.1SUPFAM:SSF56655TAIR:AT3G02870tair10-symbols:VTC4UniGene:At.21164
UniPathway:UPA00823UniProt:Q9M8S8
Coordinates (TAIR10) chr3:-:627742..629682
Molecular Weight (calculated) 29123.00 Da
IEP (calculated) 5.02
GRAVY (calculated) 0.08
Length 271 amino acids
Sequence (TAIR10)
(BLAST)
001: MADNDSLDQF LAAAIDAAKK AGQIIRKGFY ETKHVEHKGQ VDLVTETDKG CEELVFNHLK QLFPNHKFIG EETTAAFGVT ELTDEPTWIV DPLDGTTNFV
101: HGFPFVCVSI GLTIGKVPVV GVVYNPIMEE LFTGVQGKGA FLNGKRIKVS AQSELLTALL VTEAGTKRDK ATLDDTTNRI NSLLTKVRSL RMSGSCALDL
201: CGVACGRVDI FYELGFGGPW DIAAGIVIVK EAGGLIFDPS GKDLDITSQR IAASNASLKE LFAEALRLTG A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)