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AT3G02820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : zinc knuckle (CCHC-type) family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
zinc knuckle (CCHC-type) family protein; FUNCTIONS IN: zinc ion binding, nucleic acid binding; INVOLVED IN: cell cycle, replication fork protection, response to DNA damage stimulus; LOCATED IN: nucleus, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Replication fork protection component Swi3 (InterPro:IPR012923), Zinc finger, CCHC-type (InterPro:IPR001878); Has 415 Blast hits to 415 proteins in 134 species: Archae - 0; Bacteria - 4; Metazoa - 156; Fungi - 94; Plants - 93; Viruses - 28; Other Eukaryotes - 40 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111VXNeggNOG:KOG3004EMBL:AK119002EMBL:BT025722
EMBL:CP002686EnsemblPlants:AT3G02820EnsemblPlants:AT3G02820.1entrez:821018
Gene3D:4.10.60.10GeneID:821018GO:GO:0003676GO:GO:0005634
GO:GO:0006974GO:GO:0007049GO:GO:0008270GO:GO:0048478
Gramene:AT3G02820.1hmmpanther:PTHR13220HOGENOM:HOG000239518InterPro:IPR001878
InterPro:IPR012923KEGG:ath:AT3G02820KO:K10904ncoils:Coil
OMA:PKLNTERPfam:PF00098Pfam:PF07962Pfscan:PS50158
PhylomeDB:Q8GW91PRO:PR:Q8GW91ProDom:PD089639PROSITE:PS50158
Proteomes:UP000006548RefSeq:NP_186931.2SMART:SM00343SMR:Q8GW91
STRING:3702.AT3G02820.1SUPFAM:SSF57756TAIR:AT3G02820UniGene:At.41073
UniProt:Q8GW91
Coordinates (TAIR10) chr3:+:611573..613294
Molecular Weight (calculated) 31837.00 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.97
Length 282 amino acids
Sequence (TAIR10)
(BLAST)
001: MESAPTGCFK CGRPGHWSRD CPSSAPVAGN NSVSSSSAPS QIPNNEFQRS SSKSGTSIAP APKVTKTRVQ RPKLTPELLL SEDGLGYVLR YFPKSFKYRG
101: RGKEVSDLGN LIRLYSEWHT HLLPYYSFDH FVHKVQQVAS TKRVKNCINE LRERVASGVD PNKLYEKQEE NTVPSDDQDM DQPSHDEENI PSKSVDADTN
201: ADAFEDSMLN EIFDNASKLP SDEQNMDKSS ELTEEQRARM EANRLKAMEK AQNISEEQRV RMEANRLKAL ERAKARLQPN QD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)