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AT3G02780.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25587034 (2015): cytosol
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:22923678 (2012): mitochondrion
  • PMID:21841088 (2011): mitochondrion
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:18431481 (2008): plastid
FP Images

Arabidopsis cell culture (mitochondrial marker)

At3g02780-GFP
(full-length)
mitochondrial marker-RFPoverlay

Images by Sandra Tanz

Arabidopsis cell culture (plastidal marker)

At3g02780-GFP
(full-length)
plastidal marker-RFPoverlay

Images by Sandra Tanz
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2
Curator
Summary (TAIR10)
Encodes a protein with isopentenyl diphosphate:dimethylallyl diphosphate isomerase activity. There is genetic evidence that it functions in the mevalonate, but not the MEP biosynthetic pathway.
Computational
Description (TAIR10)
isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase 2 (IPP2); FUNCTIONS IN: isopentenyl-diphosphate delta-isomerase activity; INVOLVED IN: chlorophyll biosynthetic process, flower development, isoprenoid biosynthetic process; LOCATED IN: cytosol, mitochondrion, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NUDIX hydrolase domain-like (InterPro:IPR015797), NUDIX hydrolase domain (InterPro:IPR000086), Isopentenyl-diphosphate delta-isomerase, type 1 (InterPro:IPR011876); BEST Arabidopsis thaliana protein match is: isopentenyl diphosphate isomerase 1 (TAIR:AT5G16440.1); Has 2187 Blast hits to 2186 proteins in 784 species: Archae - 35; Bacteria - 1163; Metazoa - 210; Fungi - 137; Plants - 180; Viruses - 0; Other Eukaryotes - 462 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT3G02780-MONOMERBioCyc:MetaCyc:AT3G02780-MONOMERBioGrid:6293BRENDA:5.3.3.2DNASU:820960EC:5.3.3.2eggNOG:COG1443
eggNOG:KOG0142EMBL:AC018363EMBL:AF428343EMBL:AY127023EMBL:AY143845EMBL:CP002686EMBL:U49259
EnsemblPlants:AT3G02780EnsemblPlants:AT3G02780.1entrez:820960Gene3D:3.90.79.10GeneID:820960Genevisible:Q42553GO:GO:0004452
GO:GO:0005739GO:GO:0005829GO:GO:0008299GO:GO:0009507GO:GO:0009908GO:GO:0015979GO:GO:0015995
GO:GO:0016787GO:GO:0046872GO:GO:0050992Gramene:AT3G02780.1gramene_pathway:5.3.3.2gramene_pathway:NONMEVIPP-PWYgramene_pathway:PWY-5123
gramene_pathway:PWY-922gramene_plant_reactome:1119367gramene_plant_reactome:1119464gramene_plant_reactome:6876711hmmpanther:PTHR10885hmmpanther:PTHR10885:SF4HOGENOM:HOG000274106
InParanoid:Q42553IntAct:Q42553InterPro:IPR000086InterPro:IPR011876InterPro:IPR015797KEGG:00900+5.3.3.2KEGG:ath:AT3G02780
KO:K01823OMA:ATFLFKWPANTHER:PTHR10885PaxDb:Q42553Pfam:PF00293Pfam:Q42553Pfscan:PS51462
PhylomeDB:Q42553PIR:S71370PRIDE:Q42553PRO:PR:Q42553PROSITE:PS51462ProteinModelPortal:Q42553Proteomes:UP000006548
Reactome:R-ATH-191273RefSeq:NP_186927.1SMR:Q42553STRING:3702.AT3G02780.1SUPFAM:SSF55811TAIR:AT3G02780tair10-symbols:IDI2
tair10-symbols:IPIAT1tair10-symbols:IPP2TIGRfam:TIGR02150TIGRFAMs:TIGR02150UniGene:At.10819UniPathway:UPA00059UniPathway:UPA00668
UniProt:Q42553
Coordinates (TAIR10) chr3:-:602578..604648
Molecular Weight (calculated) 32609.30 Da
IEP (calculated) 6.52
GRAVY (calculated) -0.26
Length 284 amino acids
Sequence (TAIR10)
(BLAST)
001: MSASSLFNLP LIRLRSLALS SSFSSFRFAH RPLSSISPRK LPNFRAFSGT AMTDTKDAGM DAVQRRLMFE DECILVDETD RVVGHDSKYN CHLMENIEAK
101: NLLHRAFSVF LFNSKYELLL QQRSNTKVTF PLVWTNTCCS HPLYRESELI QDNALGVRNA AQRKLLDELG IVAEDVPVDE FTPLGRMLYK APSDGKWGEH
201: ELDYLLFIVR DVKVQPNPDE VAEIKYVSRE ELKELVKKAD AGEEGLKLSP WFRLVVDNFL MKWWDHVEKG TLVEAIDMKT IHKL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)