AT3G02760.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.961 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Class II aaRS and biotin synthetases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Class II aaRS and biotin synthetases superfamily protein; FUNCTIONS IN: histidine-tRNA ligase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding; INVOLVED IN: histidyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation; LOCATED IN: chloroplast, cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Histidyl-tRNA synthetase, class IIa, subgroup (InterPro:IPR015807), Aminoacyl-tRNA synthetase, class II (G/ H/ P/ S), conserved domain (InterPro:IPR002314), Anticodon-binding (InterPro:IPR004154), Histidyl-tRNA synthetase, class IIa (InterPro:IPR004516), Aminoacyl-tRNA synthetase, class II, conserved domain (InterPro:IPR006195); BEST Arabidopsis thaliana protein match is: Histidyl-tRNA synthetase 1 (TAIR:AT3G46100.1); Has 12532 Blast hits to 12512 proteins in 2976 species: Archae - 257; Bacteria - 7359; Metazoa - 371; Fungi - 267; Plants - 113; Viruses - 0; Other Eukaryotes - 4165 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:597588..600650 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97542.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.32 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.23 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 883 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAAERSSITL GGKGSSLSSS SVYNVASGVA NVRIDSSAIE RFSTRNVPSI KRSSFGIPQG LTNEETRASL AVLLNKLILS TSGPPSSSTA RSVLPLKIVE 101: ILNLKAESLE LGEIDVTEGE NIVLEKSCAS LIGICSIIDH KSTTLSQIVD SVAALSCEVT KADIASFSLL DSGDGNGDKD VIGVAGDLKV LLNGYKGTGK 201: LEIEEISKIP WIHGKFRYVV KSVHADARRE LNSGVKGGKT GSGNTGIGEA LGTTLLPLLT AIKNLGVCSF LRAKLCFEKI VDENLKKCLS EKICVENENL 301: KNSYKLAYTA HLEEDYCRFA HKLNECLGIV WRIVGLEAVA AFFALAGGEL FVQKSGDADK EESKTDKKKK KNEKKAVVGK GTSLVIQFIK DRLVSNDAAS 401: DGDQMHSLMQ CGEQILNLFN PEGRSFDSLL DKVKEIVESN ENRRLPKLPK GTRDFAKEQM AVREKAFSII QNVFKRHGAT ALDTPVFELR ETLMGKYGED 501: SKLVYDIADQ GGELCSLRYD LTVPFARYVA MNGITSFKRY QIAKVYRRDN PSKGRYREFY QCDFDIAGLF EPMGPDFEIV KILTELLDEL EIGDYEVKLN 601: HRKLLDGMLE ICGVPPEKFR TICSSIDKLD KQSFEQVKKE MVEEKGLSSE IADRIGNFVK EKGAPLELLS KLRQEGSEFL DNQSSREALD ELSIMFEALK 701: RSKCSERIVF DLSLARGLDY YTGVIFEAVC IGAEVGSIGA GGRYDNLIGM FGTKQVPAVG MSLGIERVFN IMEELNEKQK QVIRPTETQV LVSIMVDNKL 801: AEAAELVSQL WGAKINAEYL VSKRKEKHFN RAKESGIPWM VMVGEKELSG SFVTLKKLEK GSEEKEDQTC TRDRFVEELK KLL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)