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AT3G02730.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27943495 (2017): mitochondrion
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18633119 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:18431481 (2008): plastid plastid thylakoid
  • PMID:16207701 (2006): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : thioredoxin F-type 1
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
thioredoxin F-type 1 (TRXF1); FUNCTIONS IN: enzyme activator activity; INVOLVED IN: positive regulation of catalytic activity; LOCATED IN: chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin domain (InterPro:IPR013766), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: thioredoxin F2 (TAIR:AT5G16400.1); Has 15154 Blast hits to 14708 proteins in 2900 species: Archae - 210; Bacteria - 7832; Metazoa - 1846; Fungi - 908; Plants - 1556; Viruses - 3; Other Eukaryotes - 2799 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0526eggNOG:KOG0907EMBL:AC018363EMBL:AF144385EMBL:AY065391EMBL:AY084778EMBL:AY096721
EMBL:CP002686EnsemblPlants:AT3G02730EnsemblPlants:AT3G02730.1entrez:821260Gene3D:3.40.30.10GeneID:821260Genevisible:Q9XFH8
GO:GO:0000103GO:GO:0004857GO:GO:0006109GO:GO:0006457GO:GO:0006662GO:GO:0008047GO:GO:0009507
GO:GO:0009534GO:GO:0009570GO:GO:0015035GO:GO:0016671GO:GO:0034599GO:GO:0043085GO:GO:0043086
GO:GO:0045454GO:GO:0055114Gramene:AT3G02730.1hmmpanther:PTHR10438hmmpanther:PTHR10438:SF258HOGENOM:HOG000238599InParanoid:Q9XFH8
InterPro:IPR005746InterPro:IPR012336InterPro:IPR013766InterPro:IPR017937KEGG:ath:AT3G02730KO:K03671OMA:RKQCRIP
PANTHER:PTHR10438PaxDb:Q9XFH8Pfam:PF00085Pfam:Q9XFH8Pfscan:PS51352PhylomeDB:Q9XFH8PRIDE:Q9XFH8
PRO:PR:Q9XFH8PROSITE:PS00194PROSITE:PS51352ProteinModelPortal:Q9XFH8Proteomes:UP000006548RefSeq:NP_186922.1scanprosite:PS00194
SMR:Q9XFH8STRING:3702.AT3G02730.1SUPFAM:SSF52833TAIR:AT3G02730tair10-symbols:ATF1tair10-symbols:TRXF1UniGene:At.20211
UniGene:At.46169UniProt:Q9XFH8
Coordinates (TAIR10) chr3:-:588570..589591
Molecular Weight (calculated) 19326.40 Da
IEP (calculated) 9.25
GRAVY (calculated) -0.14
Length 178 amino acids
Sequence (TAIR10)
(BLAST)
001: MPLSLRLSPS PTALSPTTGG FGPSRKQCRI PYSGVPTTKI GFCSLDSRKR GDSSVVRCSL ETVNVSVGQV TEVDKDTFWP IVKAAGEKLV VLDMYTQWCG
101: PCKVIAPKYK ALSEKYDDVV FLKLDCNPDN RPLAKELGIR VVPTFKILKD NKVVKEVTGA KYDDLVAAIE TARSAASG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)