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AT3G02720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.988
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31186290 (2019): cytosol None
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Class I glutamine amidotransferase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Class I glutamine amidotransferase-like superfamily protein; FUNCTIONS IN: hydrolase activity, acting on glycosyl bonds; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C56, PfpI (InterPro:IPR006286), ThiJ/PfpI (InterPro:IPR002818); BEST Arabidopsis thaliana protein match is: Class I glutamine amidotransferase-like superfamily protein (TAIR:AT2G38860.2); Has 9235 Blast hits to 5440 proteins in 1716 species: Archae - 384; Bacteria - 8047; Metazoa - 84; Fungi - 88; Plants - 239; Viruses - 0; Other Eukaryotes - 393 (source: NCBI BLink).
Protein Annotations
EC:4.4.1.5eggNOG:COG0693eggNOG:KOG2764EMBL:AC018363
EMBL:AF360323EMBL:BT000947EMBL:CP002686EnsemblPlants:AT3G02720
EnsemblPlants:AT3G02720.1entrez:820875Gene3D:3.40.50.880GeneID:820875
Genevisible:Q9M8R4GO:GO:0004462GO:GO:0016798GO:GO:0019172
GO:GO:0019243GO:GO:0019249Gramene:AT3G02720.1hmmpanther:PTHR11019
hmmpanther:PTHR11019:SF112HOGENOM:HOG000241113InParanoid:Q9M8R4InterPro:IPR002818
InterPro:IPR006286InterPro:IPR029062KEGG:ath:AT3G02720KO:K18881
MEROPS:C56.A01OMA:PEPIDRCPaxDb:Q9M8R4PDB:3UK7
PDB:4OFWPDB:4OGGPDBsum:3UK7PDBsum:4OFW
PDBsum:4OGGPfam:PF01965Pfam:Q9M8R4Pfscan:PS51276
PhylomeDB:Q9M8R4PRIDE:Q9M8R4PRO:PR:Q9M8R4PROSITE:PS51276
ProteinModelPortal:Q9M8R4Proteomes:UP000006548RefSeq:NP_186921.1SMR:Q9M8R4
STRING:3702.AT3G02720.1SUPFAM:SSF52317TAIR:AT3G02720TIGRfam:TIGR01382
TIGRFAMs:TIGR01382UniGene:At.20933UniProt:Q9M8R4
Coordinates (TAIR10) chr3:+:586336..588088
Molecular Weight (calculated) 41647.90 Da
IEP (calculated) 5.08
GRAVY (calculated) 0.09
Length 388 amino acids
Sequence (TAIR10)
(BLAST)
001: MANSRTVLIL CGDYMEDYEV MVPFQALQAF GITVHTVCPG KKAGDSCPTA VHDFCGHQTY FESRGHNFTL NATFDEVDLS KYDGLVIPGG RAPEYLALTA
101: SVVELVKEFS RSGKPIASIC HGQLILAAAD TVNGRKCTAY ATVGPSLVAA GAKWVEPITP DVCVVDGSLI TAATYEGHPE FIQLFVKALG GKITGANKRI
201: LFLCGDYMED YEVKVPFQSL QALGCQVDAV CPEKKAGDRC PTAIHDFEGD QTYSEKPGHT FALTTNFDDL VSSSYDALVI PGGRAPEYLA LNEHVLNIVK
301: EFMNSEKPVA SICHGQQILA AAGVLKGRKC TAYPAVKLNV VLGGGTWLEP DPIDRCFTDG NLVTGAAWPG HPEFVSQLMA LLGIQVSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)