AT3G02590.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.486 vacuole 0.325 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Fatty acid hydroxylase superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Fatty acid hydroxylase superfamily protein; FUNCTIONS IN: oxidoreductase activity, C-5 sterol desaturase activity, iron ion binding; INVOLVED IN: oxidation reduction, sterol biosynthetic process, fatty acid biosynthetic process; LOCATED IN: endoplasmic reticulum; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Fatty acid hydroxylase (InterPro:IPR006694); BEST Arabidopsis thaliana protein match is: sterol 1 (TAIR:AT3G02580.1); Has 2431 Blast hits to 2426 proteins in 433 species: Archae - 0; Bacteria - 540; Metazoa - 353; Fungi - 499; Plants - 398; Viruses - 0; Other Eukaryotes - 641 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:549340..550553 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33112.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.39 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.24 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 279 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAATMADYND QIVNETSFYN RMVLSHLLPV NLWEPLPHFL QTWLRNYLAG NILYFISGFL WCFYIYYLKL NVYVPKESIP TRKAMLLQIY VAMKAMPWYT 101: LLPAVSEYMI EHGWTKCYST LDHFNWFLCF LYIALYLVLV EFMIYWVHKE LHDIKFLYKH LHATHHMYNK QNTLSPFAGL AFHPLDGILQ AIPHVIALFI 201: VPIHLITHLS LLFLEGIWTA SIHDCIHGNI WPIMGAGYHT IHHTTYKHNY GHYTIWMDWM FGSLMVPLAE KDSFKEKEK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)