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AT3G02400.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : SMAD/FHA domain-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SMAD/FHA domain-containing protein ; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT4G14490.1); Has 35808 Blast hits to 23469 proteins in 1463 species: Archae - 220; Bacteria - 3517; Metazoa - 15859; Fungi - 2964; Plants - 1604; Viruses - 219; Other Eukaryotes - 11425 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J7VZeggNOG:ENOG410ZNU1EMBL:AC021640EMBL:CP002686
EnsemblPlants:AT3G02400EnsemblPlants:AT3G02400.1entrez:821210Gene3D:2.60.200.20
GeneID:821210GO:GO:0003677Gramene:AT3G02400.1hmmpanther:PTHR23308
hmmpanther:PTHR23308:SF34HOGENOM:HOG000209985InterPro:IPR000253InterPro:IPR008984
KEGG:ath:AT3G02400ncoils:CoilOMA:QNTRSTRPfam:PF00498
Pfscan:PS50006PhylomeDB:Q9M8A0PROSITE:PS50006Proteomes:UP000006548
RefSeq:NP_186889.1SMART:SM00240SMR:Q9M8A0SUPFAM:SSF49879
TAIR:AT3G02400UniGene:At.53159UniProt:Q9M8A0
Coordinates (TAIR10) chr3:+:489830..491587
Molecular Weight (calculated) 66391.20 Da
IEP (calculated) 4.81
GRAVY (calculated) -1.17
Length 585 amino acids
Sequence (TAIR10)
(BLAST)
001: MVPPLLKLDF TQGPRAGDSL GFKPGSTIRI GRIVRGNEIA IKDAGISTKH LRIVSDSENW IIHDLGSSNG TILNSDTIDS DTPVNLSHGD EIKLGEYTSI
101: LVNFGSDVVQ APQEHKLPPR PRRNNKRLAA SDPDPDPIES VQEKPKRTRG SSKQEENELP KSTRASRKKN LDDIADKEEE LDVEIEKVVK ARVGRPRKNA
201: GSAIAKEEEV VEEKKRVGRP RKNASSAITE EEEVVEEKKG NSRARRGKNS EIVQKSIKLE VEDTPKAVEI SEVKSRKRVT RSKQIENECF GLEVKDEKRT
301: TRSTRSKTTE IGGESFLELE MVLNQARKSR AKRKKMDEEP SKETRNDDAG EEVLKNCHVE EDKENEAQEG CSGRSDDICD QEDEKECDGS KRVEQVEIEL
401: RKKSTVEGLK CTDKEDGETE NSQDIERERE NENEKEAQEG CSERSDKEYE RVGGGAKRVE QVEIELRKKS TVGEDDLNCT VREDGETENL QEIEEECHDE
501: ESDCKVEEAG FATLDEEKVG QGWNNKKVER VEVYLEKMKL REWFDAIEVQ LPKQTIEETE KMIEPMRSKS MRVHKHIAEQ KEKGD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)