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AT3G02380.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : CONSTANS-like 2
Curator
Summary (TAIR10)
homologous to the flowering-time gene CONSTANS (CO) encoding zinc-finger proteins
Computational
Description (TAIR10)
CONSTANS-like 2 (COL2); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity, zinc ion binding; INVOLVED IN: regulation of flower development; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: CCT domain (InterPro:IPR010402), Zinc finger, B-box (InterPro:IPR000315); BEST Arabidopsis thaliana protein match is: B-box type zinc finger protein with CCT domain (TAIR:AT5G15840.1); Has 3185 Blast hits to 2478 proteins in 141 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2995; Viruses - 0; Other Eukaryotes - 190 (source: NCBI BLink).
Protein Annotations
BioGrid:6631eggNOG:COG5641eggNOG:KOG1601EMBL:AC021640EMBL:AC068900EMBL:AF370149EMBL:AY059092
EMBL:AY088779EMBL:CP002686EMBL:L81119EMBL:L81120EnsemblPlants:AT3G02380EnsemblPlants:AT3G02380.1entrez:821298
GeneID:821298Genevisible:Q96502GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0008270
GO:GO:0009416GO:GO:0009658GO:GO:0009909Gramene:AT3G02380.1hmmpanther:PTHR31319hmmpanther:PTHR31319:SF10HOGENOM:HOG000238833
InParanoid:Q96502IntAct:Q96502InterPro:IPR000315InterPro:IPR010402KEGG:ath:AT3G02380OMA:CEADSAYPaxDb:Q96502
Pfam:PF00643Pfam:PF06203Pfam:Q96502Pfscan:PS50119Pfscan:PS51017PhylomeDB:Q96502PRO:PR:Q96502
PROSITE:PS50119PROSITE:PS51017ProteinModelPortal:Q96502Proteomes:UP000006548RefSeq:NP_186887.1SMART:SM00336STRING:3702.AT3G02380.1
TAIR:AT3G02380tair10-symbols:ATCOL2tair10-symbols:COL2UniGene:At.10373UniProt:Q96502
Coordinates (TAIR10) chr3:-:487438..488624
Molecular Weight (calculated) 38525.60 Da
IEP (calculated) 5.64
GRAVY (calculated) -0.60
Length 347 amino acids
Sequence (TAIR10)
(BLAST)
001: MLKEESNESG TWARACDTCR SAACTVYCEA DSAYLCTTCD ARVHAANRVA SRHERVRVCQ SCESAPAAFL CKADAASLCT ACDAEIHSAN PLARRHQRVP
101: ILPLSANSCS SMAPSETDAD NDEDDREVAS WLLPNPGKNI GNQNNGFLFG VEYLDLVDYS SSMDNQFEDN QYTHYQRSFG GDGVVPLQVE ESTSHLQQSQ
201: QNFQLGINYG FSSGAHYNNN SLKDLNHSAS VSSMDISVVP ESTASDITVQ HPRTTKETID QLSGPPTQVV QQLTPMEREA RVLRYREKKK TRKFDKTIRY
301: ASRKAYAEIR PRIKGRFAKR IETEAEAEEI FSTSLMSETG YGIVPSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)