AT3G02330.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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| FP Images |
Arabidopsis cell culture (mitochondrial marker)
Arabidopsis cell culture (plastidal marker)
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885), Tetratricopeptide-like helical (InterPro:IPR011990); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT4G39530.1); Has 56701 Blast hits to 14050 proteins in 283 species: Archae - 2; Bacteria - 22; Metazoa - 148; Fungi - 141; Plants - 55528; Viruses - 0; Other Eukaryotes - 860 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:-:473881..476592 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 101720.00 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.37 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.06 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 903 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MAESLRLLHM TRSVVSFNRC LTEKISYRRV PSFSYFTDFL NQVNSVSTTN FSFVFKECAK QGALELGKQA HAHMIISGFR PTTFVLNCLL QVYTNSRDFV 101: SASMVFDKMP LRDVVSWNKM INGYSKSNDM FKANSFFNMM PVRDVVSWNS MLSGYLQNGE SLKSIEVFVD MGREGIEFDG RTFAIILKVC SFLEDTSLGM 201: QIHGIVVRVG CDTDVVAASA LLDMYAKGKR FVESLRVFQG IPEKNSVSWS AIIAGCVQNN LLSLALKFFK EMQKVNAGVS QSIYASVLRS CAALSELRLG 301: GQLHAHALKS DFAADGIVRT ATLDMYAKCD NMQDAQILFD NSENLNRQSY NAMITGYSQE EHGFKALLLF HRLMSSGLGF DEISLSGVFR ACALVKGLSE 401: GLQIYGLAIK SSLSLDVCVA NAAIDMYGKC QALAEAFRVF DEMRRRDAVS WNAIIAAHEQ NGKGYETLFL FVSMLRSRIE PDEFTFGSIL KACTGGSLGY 501: GMEIHSSIVK SGMASNSSVG CSLIDMYSKC GMIEEAEKIH SRFFQRANVS GTMEELEKMH NKRLQEMCVS WNSIISGYVM KEQSEDAQML FTRMMEMGIT 601: PDKFTYATVL DTCANLASAG LGKQIHAQVI KKELQSDVYI CSTLVDMYSK CGDLHDSRLM FEKSLRRDFV TWNAMICGYA HHGKGEEAIQ LFERMILENI 701: KPNHVTFISI LRACAHMGLI DKGLEYFYMM KRDYGLDPQL PHYSNMVDIL GKSGKVKRAL ELIREMPFEA DDVIWRTLLG VCTIHRNNVE VAEEATAALL 801: RLDPQDSSAY TLLSNVYADA GMWEKVSDLR RNMRGFKLKK EPGCSWVELK DELHVFLVGD KAHPRWEEIY EELGLIYSEM KPFDDSSFVR GVEVEEEDQW 901: CYC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)