suba logo
AT3G02180.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
plasma membrane 0.698
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : SPIRAL1-like3
Curator
Summary (TAIR10)
SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion.
Computational
Description (TAIR10)
SPIRAL1-like3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like4 (TAIR:AT5G15600.1); Has 418 Blast hits to 329 proteins in 68 species: Archae - 2; Bacteria - 13; Metazoa - 50; Fungi - 15; Plants - 147; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J66KeggNOG:ENOG410XXM3EMBL:AC009755EMBL:AC011664EMBL:AY045878EMBL:AY086253EMBL:AY117217
EMBL:CP002686EnsemblPlants:AT3G02180EnsemblPlants:AT3G02180.1EnsemblPlants:AT3G02180.2entrez:821277ExpressionAtlas:Q9S7P8GeneID:821277
Genevisible:Q9S7P8GO:GO:0005874GO:GO:0009735hmmpanther:PTHR33403hmmpanther:PTHR33403:SF5HOGENOM:HOG000240966InParanoid:Q9S7P8
iPTMnet:Q9S7P8OMA:ANNYMRSPaxDb:Q9S7P8Pfam:Q9S7P8PhylomeDB:Q9S7P8PRIDE:Q9S7P8PRO:PR:Q9S7P8
Proteomes:UP000006548RefSeq:NP_566166.1RefSeq:NP_974209.1STRING:3702.AT3G02180.1TAIR:AT3G02180tair10-symbols:SP1L3UniGene:At.19767
UniProt:Q9S7P8
Coordinates (TAIR10) chr3:+:404989..405457
Molecular Weight (calculated) 12172.90 Da
IEP (calculated) 10.01
GRAVY (calculated) -0.63
Length 122 amino acids
Sequence (TAIR10)
(BLAST)
001: MGKARGVNNG VNESSLGYLF GSGQPSSAAA ATMGTTTTTT TTTTTDGTGG RPITTTTTTV TDNKKTSAGV RGSPNNYFRS EGQNCGNFLT DRPSTKVHAA
101: PGGGSSLDYL FGGPSPAGSG NK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)