AT3G02180.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.971 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SPIRAL1-like3 | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
SPIRAL1-LIKE3 belongs to a six-member gene family in Arabidopsis; all members share high sequence similarity in amino- and carboxy-terminal regions. Regulates cortical microtubule organization. Mutant plants exhibit altered patterns of root, leaf and petal growth as a result of defective anisotropic cell expansion. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
SPIRAL1-like3 (SP1L3); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 26 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: SPIRAL1-like4 (TAIR:AT5G15600.1); Has 418 Blast hits to 329 proteins in 68 species: Archae - 2; Bacteria - 13; Metazoa - 50; Fungi - 15; Plants - 147; Viruses - 0; Other Eukaryotes - 191 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:404989..405457 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 12172.90 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.01 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||
| Length | 122 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGKARGVNNG VNESSLGYLF GSGQPSSAAA ATMGTTTTTT TTTTTDGTGG RPITTTTTTV TDNKKTSAGV RGSPNNYFRS EGQNCGNFLT DRPSTKVHAA 101: PGGGSSLDYL FGGPSPAGSG NK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)