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AT3G02170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : longifolia2
Curator
Summary (TAIR10)
Encodes LONGIFOLIA2 (LNG2). Regulates leaf morphology by promoting cell expansion in the leaf-length direction. The LNG2 homologue LNG1 (At5g15580) has similar function.
Computational
Description (TAIR10)
LONGIFOLIA2 (LNG2); BEST Arabidopsis thaliana protein match is: longifolia1 (TAIR:AT5G15580.1); Has 1276 Blast hits to 643 proteins in 119 species: Archae - 0; Bacteria - 21; Metazoa - 420; Fungi - 51; Plants - 161; Viruses - 6; Other Eukaryotes - 617 (source: NCBI BLink).
Protein Annotations
BioGrid:6612eggNOG:ENOG410JU3SeggNOG:ENOG411078IEMBL:AC009755EMBL:AC011664EMBL:AY056131EMBL:AY086190
EMBL:AY150501EMBL:CP002686EnsemblPlants:AT3G02170EnsemblPlants:AT3G02170.1entrez:821279GeneID:821279Genevisible:Q9S823
GO:GO:0005737GO:GO:0005856GO:GO:0008017GO:GO:0051513Gramene:AT3G02170.1hmmpanther:PTHR31680hmmpanther:PTHR31680:SF4
HOGENOM:HOG000240150InParanoid:Q9S823InterPro:IPR025486InterPro:IPR033334iPTMnet:Q9S823KEGG:ath:AT3G02170ncoils:Coil
OMA:DLEYSMIPANTHER:PTHR31680PaxDb:Q9S823Pfam:PF14309Pfam:Q9S823PhylomeDB:Q9S823PRIDE:Q9S823
PRO:PR:Q9S823ProteinModelPortal:Q9S823Proteomes:UP000006548RefSeq:NP_566165.2STRING:3702.AT3G02170.1TAIR:AT3G02170tair10-symbols:LNG2
UniGene:At.23828UniGene:At.68983UniGene:At.74850UniGene:At.75054UniGene:At.75162UniProt:Q9S823
Coordinates (TAIR10) chr3:-:396208..399393
Molecular Weight (calculated) 101633.00 Da
IEP (calculated) 9.99
GRAVY (calculated) -0.84
Length 905 amino acids
Sequence (TAIR10)
(BLAST)
001: MSAKLLYNLS DENPNLNKQF GCMNGIFQVF YRQHCPATPV TVSGGAEKSL PPGERRGSVG ETNMESDKET ERSSTKKKKS AAKEKHRVSF ESSSRPSFSS
101: SPRSSSFSSA EVSTTASQFD QPGENLIREQ PNGGLMMPYD LKELVKGSIN REIRTRGEEA SFTQQQQPIS ARSSMLLLKE SSLRSPCRSS NEWNEGRGAA
201: MKFKESHRLS YDEREMRNNG FRVGSKLKET PRLSLDSRSN SFRSPRADAA RSSCPEEPAT MTHRRSSSSV VAKLMGLEVI ADNSDTEQRR ENRFCDSPRP
301: MSRVEPTALQ RSRSVDSIKR IPASAASKFP MEPAPWKQMK AGDSALTVYG EIQKRLTQLE FKKSGKDLRA LKQILEAMEK TQQLIDESRD DGTLSTTTLM
401: QRTHKPVSAA TSPARNFKSS SIVVMKSAAP VSTSPLPQNV TLPNVKVGNS RQTRKVTSGK QNAMDLTPRP GLYKGQLDST KSNSPKTVRS RQALAADAGS
501: MTKSGRSQQH SVSPRTQPKK LGFEKQTRPT TPKSEPGKRQ LGRQQTEVAS PRRKQMIKPH STLQQPDDRL SDARSDLRSL RSDSNISLGS NVDIEVTSRH
601: RLERNCDFPE QHTPKQRSPD FGIKQDRPSL KPLKVTVEQP SPVSVLDAVF DEEDSPSPVR KISLSFKEED ALRSEESEWI NKPTSFCRSV PFPQSNRGPM
701: KPSSDHFECS PEEGADFKSG NHKYILEILL ASGILRDLEY SMISFQLHQT RLPINPGLFF ILEQNKASNV TLPDNKHRGR GFRQQQTNPT ETIRRKLVFD
801: TVNEILARKF TAEGCIKPRL IANPLKKLEK ISKEEQLLQT LCSEIDRLQQ NNSNCILEDD EEDIIWEDLQ SQSMNLKEFE GETPGIVLDI ERMIFRDLVN
901: EVCFC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)