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AT3G02080.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17934214 (2008): cytosol
  • PMID:15821981 (2005): cytosol cytosolic ribosomes
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein S19e family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein S19e family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic small ribosomal subunit, cytosolic ribosome, ribosome, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S19e, conserved site (InterPro:IPR018277), Ribosomal protein S19e (InterPro:IPR001266); BEST Arabidopsis thaliana protein match is: Ribosomal protein S19e family protein (TAIR:AT5G15520.1); Has 1131 Blast hits to 1131 proteins in 394 species: Archae - 214; Bacteria - 4; Metazoa - 402; Fungi - 148; Plants - 164; Viruses - 0; Other Eukaryotes - 199 (source: NCBI BLink).
Protein Annotations
BioGrid:6453eggNOG:COG2238eggNOG:KOG3411EMBL:AC011664EMBL:AF370277EMBL:AY063012EMBL:AY088134
EMBL:CP002686EnsemblPlants:AT3G02080EnsemblPlants:AT3G02080.1entrez:821120GeneID:821120Genevisible:Q9SGA6GO:GO:0003735
GO:GO:0005618GO:GO:0005829GO:GO:0006412GO:GO:0009506GO:GO:0022626GO:GO:0022627Gramene:AT3G02080.1
hmmpanther:PTHR11710HOGENOM:HOG000230649InParanoid:Q9SGA6IntAct:Q9SGA6InterPro:IPR001266InterPro:IPR011991InterPro:IPR018277
iPTMnet:Q9SGA6KEGG:ath:AT3G02080KO:K02966OMA:QEDFWATPANTHER:PTHR11710PaxDb:Q9SGA6Pfam:PF01090
Pfam:Q9SGA6PhylomeDB:Q9SGA6PRIDE:Q9SGA6PRO:PR:Q9SGA6ProDom:PD003854PROSITE:PS00628ProteinModelPortal:Q9SGA6
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-1799339Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_186857.1scanprosite:PS00628SMART:SM01413SMR:Q9SGA6STRING:3702.AT3G02080.1
SUPFAM:SSF46785TAIR:AT3G02080UniGene:At.24575UniProt:Q9SGA6
Coordinates (TAIR10) chr3:-:364138..365161
Molecular Weight (calculated) 15829.10 Da
IEP (calculated) 10.67
GRAVY (calculated) -0.51
Length 143 amino acids
Sequence (TAIR10)
(BLAST)
001: MATGKTVKDV SPHDFVKAYA SHLKRSGKIE LPTWTDIVKT GKLKELAPYD PDWYYIRAAS MARKVYLRGG LGVGAFRRIY GGSKRNGSRP PHFCKSSGGI
101: ARHILQQLET MNIVELDTKG GRRITSSGQR DLDQVAGRIA VEP
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)